2c7ac21465
Added standardization on SO features.
2022-06-06 13:51:15 +00:00
2acf6ff9fb
Exception handling in case of empty ibi. Changes of the method EDA uses in main.py. Other small corrections.
2022-06-03 12:34:36 +00:00
d300f0f8f0
Fixed RAPIDS bug: error when IBI.csv is empty.
2022-06-02 11:43:49 +00:00
fbf6a77dfc
Small misc changes
2022-06-02 06:41:53 +00:00
5532043b1f
Patching IBI with BVP - completed.
2022-05-25 19:39:47 +00:00
bb62497ba6
Patching IBI with BVP - selecting appropriate pipeline entry point. WIP
2022-05-24 11:07:18 +00:00
2a8f58f5c8
Patching IBI with BVP. WIP
2022-05-20 13:18:45 +00:00
1471c86c62
Cr-features version update in rapids venv.
2022-05-13 13:37:12 +00:00
6864cfe775
Changes after thorough testing with available data.
2022-05-13 13:35:34 +00:00
c1564f0cae
Changed wrapper method calculate_feature to its newest version (for TEMP and ACC).
2022-05-11 14:21:21 +00:00
31e36e7400
Alternating Second order and full segment features corresponding to config settings.
2022-05-11 08:50:15 +00:00
9cf9e1fe14
Testing and modifying the code with different E4 data.
2022-05-10 11:36:49 +00:00
f62a1302dd
Cr-features corrections for ACC and TEMP sensors
2022-05-09 11:01:52 +00:00
5638367999
Implementation of the second order features.
2022-04-25 13:07:03 +00:00
66451160e9
Calculating HRV features with IBI.csv.
2022-04-20 10:44:51 +00:00
8c8fe1fec7
Modifications, mostly imports, after changes in cr-features module.
2022-04-19 13:24:46 +00:00
075c64d1e5
HRV: changed wrapper calcFeat method with specialized one.
2022-04-14 11:51:53 +00:00
c05b047c2d
Correct outstanding baseline feature mistake.
2022-04-13 17:05:16 +02:00
53ec52a954
Disable (SOME) feature cleaning for ESM data.
2022-04-13 16:01:31 +02:00
3c058e4463
Add option to calculate features within windows and store it in CSV (all sensors).
2022-04-13 13:18:23 +00:00
144f0d0dcf
Account for missing baseline data.
2022-04-13 14:56:28 +02:00
ed5314aa98
Merge remote-tracking branch 'origin/master'
2022-04-12 17:27:25 +02:00
11c64cfc1a
Include all participants again.
2022-04-12 17:20:19 +02:00
a6a37c7bd9
Drop NaN targets.
...
This mirrors INNER join in merge_features_and_targets_for_individual_model.py:
data = pd.concat([sensor_features, targets[["target"]]], axis=1, join="inner")
2022-04-12 17:01:49 +02:00
9f5edf1c2b
Revert "Add a rule for model baselines."
...
The example was for a classification rather than regression problem.
This reverts commit 9ab0c8f289
2022-04-12 16:59:42 +02:00
4ad261fae5
Rename baseline features AGAIN.
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Correct other mistakes.
2022-04-12 16:55:01 +02:00
74cf4ada1c
Cr-feat window length for all empaticas sensors.
2022-04-12 14:00:44 +00:00
9ab0c8f289
Add a rule for model baselines.
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Add baselines and helper functions to main models dir.
2022-04-12 14:23:58 +02:00
570d2eb656
Add the file for population model to Snakefile.
2022-04-12 14:11:40 +02:00
f5688f6154
Add a rule to merge sensor and baseline features.
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And select target as before.
2022-04-08 15:42:04 +02:00
b1f356c3f7
Extract a function to be used elsewhere.
2022-04-08 15:36:32 +02:00
7ff3dcf5fc
Move and rename target variable.
2022-04-06 18:21:09 +02:00
50c0defca7
Select target columns (no parsing necessary).
2022-04-06 18:16:49 +02:00
ac86221662
[WIP] Add a rule to parse targets.
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Does nothing for now.
2022-04-06 17:47:03 +02:00
baa94c4c4e
Correct additional error in feature file naming.
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Add the final feature file to the list in Snakefile.
2022-04-06 17:29:17 +02:00
d2fbef5234
Merge branch 'labels' of https://repo.ijs.si/junoslukan/rapids into labels
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# Conflicts:
# src/features/phone_esm/straw/preprocess.py
2022-04-05 19:28:37 +02:00
d326a1b09d
Include the constant directly in main.py.
2022-04-05 19:08:43 +02:00
2e545e81f0
Include feature calculations for different scales.
2022-04-05 19:05:34 +02:00
cbc8ae4e03
Add necessary checks for empty data frames.
2022-04-05 18:58:09 +02:00
f50a13167e
Add feature files back to Snakefile.
2022-04-05 18:37:58 +02:00
e84c35a36a
Remove unnecessary parameters from preprocess_esm.
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And correct the newly named interim file.
2022-04-05 18:36:09 +02:00
e2ce68f591
Defer creation of feature files to esm_features rule.
2022-04-05 18:30:04 +02:00
751b04f3f4
Pass scale names to Snakemake correctly.
2022-04-05 18:14:37 +02:00
99245afca3
Try a different approach for preprocessing ESMs.
...
It is important that this follows generic RAPIDS pattern.
In the subsequent step of calculating features,
there is an expected file and folder structure of data/interim.
See rules/common.smk/find_features_files()
2022-04-05 18:02:31 +02:00
ed298a9479
Implement the basic feature extraction steps.
2022-04-05 15:46:02 +02:00
1c42347b9b
Small changes.
2022-04-04 12:19:33 +00:00
c050174ca3
Various minimal changes.
2022-03-31 09:16:00 +00:00
f9e40711e7
Modified README for RAPIDS-CalculatingFeatures integration.
2022-03-30 16:17:07 +00:00
a357138f6e
Added CF for HRV and shortened test data
2022-03-30 15:01:24 +00:00
470993eeb0
Modification of getSampleRate method for all CF scripts.
2022-03-30 15:00:11 +00:00
primoz
=
junos