99245afca3
Try a different approach for preprocessing ESMs.
...
It is important that this follows generic RAPIDS pattern.
In the subsequent step of calculating features,
there is an expected file and folder structure of data/interim.
See rules/common.smk/find_features_files()
2022-04-05 18:02:31 +02:00
798ec973b4
[WIP] Add a rule for ESM features.
2022-03-30 10:43:30 +02:00
7173ca13e3
Rename a parameter.
2022-03-30 10:40:53 +02:00
23f0aaba3a
Get the name of the questionnaire from Snakefile.
2022-03-16 18:28:57 +01:00
679f00dc19
Enable selecting any questionnaire as target.
2022-03-16 17:55:44 +01:00
cb116100dd
Move preprocessing to features.
2022-03-16 17:06:42 +01:00
d470eef27e
Add a rule to preprocess and clean ESM.
2022-03-09 18:38:46 +01:00
aedb8b6785
Write questionnaire data to data/interim.
2022-03-01 12:02:36 +01:00
30ac8b1cd5
Start calculating demand control features.
2022-02-23 19:08:10 +01:00
176367631b
Prepare baseline feature rule.
2022-02-23 11:09:33 +01:00
bf9c764c97
Split baseline data to participants.
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And some csv I/O settings.
2022-02-04 18:37:57 +01:00
16e608db74
First merge baseline datasets.
2022-02-04 18:21:42 +01:00
204f6f50b0
Read the relevant files.
2022-02-04 18:06:02 +01:00
685ed6a546
Set up demographic data download.
2022-02-04 17:37:00 +01:00
ffa7a30575
Make place for STRAW models.
2022-02-04 17:25:24 +01:00
b29f902915
Look into ESM table for device_id.
2021-12-15 20:18:12 +01:00
5a9252e46e
Merge remote-tracking branch 'origin/master'
2021-12-15 18:32:36 +01:00
e5cc02501f
Set the timezone.csv path in config.
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Take into account that TZCODES_FILE can be created with a rule.
2021-12-15 18:09:30 +01:00
1f54195437
Configure timezone file to be created automatically.
2021-12-08 18:21:29 +01:00
0b8a493ff2
Incorporate mulitple timezones into RAPIDS.
2021-12-01 18:20:27 +01:00
f0d29d0d1a
Incorporate DB query for usernames into snakemake workflow.
2021-12-01 18:14:27 +01:00
da5ff0f36e
Correct small errors in settings.
2021-11-29 18:04:06 +01:00
181e4f0118
Add parameters to yaml file.
...
And use these in the prepare_participants_file function.
2021-11-29 16:57:50 +01:00
39bd244511
[WIP] Prepare yaml files.
...
These will be used to create participants files.
2021-11-24 19:11:19 +01:00
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
f340b89c58
Temporary revert PHONE_LOCATIONS BARNETT provider to use R script
2021-09-23 18:16:13 -04:00
a3fb718aea
Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
2021-09-23 17:40:06 -04:00
a8a178486b
Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events
2021-09-15 10:28:37 -04:00
834bd3b93d
Refactor in Python of Barnett provider
...
Co-authored-by: Shirley Hayati <sahayati@ucdavis.edu>
Co-authored-by: JulioV <JulioV@users.noreply.github.com>
2021-08-04 15:33:02 -04:00
cefcb0635b
Update heatmap of recorded phone sensors
2021-06-29 09:49:24 -04:00
bc06477d89
Update heatmap of sensor row count
2021-06-29 09:49:24 -04:00
e98a8ff7ca
Update histogram of phone data yield
2021-06-29 09:49:24 -04:00
f436f1f530
Update heatmap of correlation matrix
2021-06-29 09:49:23 -04:00
4d37696158
Update heatmaps of overall data yield
2021-06-29 09:48:30 -04:00
4b8698a4c6
adding app_episode with the changes as mentioned in the comments
2021-06-10 14:17:56 -04:00
9687081fbe
Refactor the rule phone_locations_add_doryab_extra_columns
2021-05-28 09:48:36 -04:00
0d6f51be8b
Refactor location features from Doryab provider & add a new strategy to infer home location & fix bugs
2021-05-26 17:36:52 -04:00
32472461ec
- Fix bug when no phone data yield is needed to process location data
...
- Remove location rows with the same timestamp based on their accuracy
2021-05-26 14:04:29 -04:00
edf71e055d
Add the EXCLUDE_SLEEP module for steps intraday features
2021-05-21 15:23:21 -04:00
9c56422529
Add calories intraday features
2021-04-20 12:00:38 -04:00
c48c1c8f24
Optimize Barnett's computation multi-day segments
2021-03-28 15:29:07 -04:00
d0858f8833
Fix overlapping periodic time segments
2021-03-28 15:29:07 -04:00
a5eb535126
Update visualizations docs & add time flag for heatmap of overall data yield
2021-03-23 21:40:55 -04:00
d6c22fdbc7
Fix an import bug and docs
2021-03-15 19:35:58 -04:00
4528ab3641
Replace SRC LANGUAGE and FOLDER with SCRIPT
2021-03-14 22:14:13 -04:00
f4b2bd1fb2
Cleanup data/
2021-03-14 13:36:22 -04:00
ffaa8f8a1c
Update create_example_participant_files rule
2021-03-12 20:04:43 -05:00
2b6447105a
Migrate analysis example to new data stream
2021-03-12 19:52:34 -05:00
fae0c2ac05
Swap TABLE for CONTAINER
2021-03-12 18:14:49 -05:00
d529490999
Migrate fitbit features to new data stream
2021-03-12 12:38:36 -05:00
junos
Meng Li
JulioV
kirtirajk