5a777ac79f
Working version that integrates both phone and empatica feature calculations.
2022-07-07 15:00:47 +00:00
887fd7dc72
Merge branch 'empatica_calculating_features'
2022-07-06 11:53:21 +00:00
9ea39dc557
Standardization as a Snakefile's rule enabled for all E4 sensors.
2022-06-13 18:17:30 +00:00
402059871f
Making standardization as a rule. WIP: done only for BVP.
2022-06-13 14:12:03 +00:00
5532043b1f
Patching IBI with BVP - completed.
2022-05-25 19:39:47 +00:00
2a8f58f5c8
Patching IBI with BVP. WIP
2022-05-20 13:18:45 +00:00
31e36e7400
Alternating Second order and full segment features corresponding to config settings.
2022-05-11 08:50:15 +00:00
5638367999
Implementation of the second order features.
2022-04-25 13:07:03 +00:00
3c058e4463
Add option to calculate features within windows and store it in CSV (all sensors).
2022-04-13 13:18:23 +00:00
9f5edf1c2b
Revert "Add a rule for model baselines."
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The example was for a classification rather than regression problem.
This reverts commit 9ab0c8f289
2022-04-12 16:59:42 +02:00
4ad261fae5
Rename baseline features AGAIN.
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Correct other mistakes.
2022-04-12 16:55:01 +02:00
9ab0c8f289
Add a rule for model baselines.
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Add baselines and helper functions to main models dir.
2022-04-12 14:23:58 +02:00
f5688f6154
Add a rule to merge sensor and baseline features.
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And select target as before.
2022-04-08 15:42:04 +02:00
50c0defca7
Select target columns (no parsing necessary).
2022-04-06 18:16:49 +02:00
ac86221662
[WIP] Add a rule to parse targets.
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Does nothing for now.
2022-04-06 17:47:03 +02:00
baa94c4c4e
Correct additional error in feature file naming.
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Add the final feature file to the list in Snakefile.
2022-04-06 17:29:17 +02:00
cbc8ae4e03
Add necessary checks for empty data frames.
2022-04-05 18:58:09 +02:00
e84c35a36a
Remove unnecessary parameters from preprocess_esm.
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And correct the newly named interim file.
2022-04-05 18:36:09 +02:00
e2ce68f591
Defer creation of feature files to esm_features rule.
2022-04-05 18:30:04 +02:00
751b04f3f4
Pass scale names to Snakemake correctly.
2022-04-05 18:14:37 +02:00
99245afca3
Try a different approach for preprocessing ESMs.
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It is important that this follows generic RAPIDS pattern.
In the subsequent step of calculating features,
there is an expected file and folder structure of data/interim.
See rules/common.smk/find_features_files()
2022-04-05 18:02:31 +02:00
798ec973b4
[WIP] Add a rule for ESM features.
2022-03-30 10:43:30 +02:00
7173ca13e3
Rename a parameter.
2022-03-30 10:40:53 +02:00
23f0aaba3a
Get the name of the questionnaire from Snakefile.
2022-03-16 18:28:57 +01:00
679f00dc19
Enable selecting any questionnaire as target.
2022-03-16 17:55:44 +01:00
cb116100dd
Move preprocessing to features.
2022-03-16 17:06:42 +01:00
dc2b462145
Reseting files to defaults - for Minimal Working Example
2022-03-16 13:30:19 +00:00
d470eef27e
Add a rule to preprocess and clean ESM.
2022-03-09 18:38:46 +01:00
aedb8b6785
Write questionnaire data to data/interim.
2022-03-01 12:02:36 +01:00
30ac8b1cd5
Start calculating demand control features.
2022-02-23 19:08:10 +01:00
176367631b
Prepare baseline feature rule.
2022-02-23 11:09:33 +01:00
bf9c764c97
Split baseline data to participants.
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And some csv I/O settings.
2022-02-04 18:37:57 +01:00
16e608db74
First merge baseline datasets.
2022-02-04 18:21:42 +01:00
204f6f50b0
Read the relevant files.
2022-02-04 18:06:02 +01:00
685ed6a546
Set up demographic data download.
2022-02-04 17:37:00 +01:00
ffa7a30575
Make place for STRAW models.
2022-02-04 17:25:24 +01:00
b29f902915
Look into ESM table for device_id.
2021-12-15 20:18:12 +01:00
5a9252e46e
Merge remote-tracking branch 'origin/master'
2021-12-15 18:32:36 +01:00
e5cc02501f
Set the timezone.csv path in config.
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Take into account that TZCODES_FILE can be created with a rule.
2021-12-15 18:09:30 +01:00
1f54195437
Configure timezone file to be created automatically.
2021-12-08 18:21:29 +01:00
0b8a493ff2
Incorporate mulitple timezones into RAPIDS.
2021-12-01 18:20:27 +01:00
f0d29d0d1a
Incorporate DB query for usernames into snakemake workflow.
2021-12-01 18:14:27 +01:00
da5ff0f36e
Correct small errors in settings.
2021-11-29 18:04:06 +01:00
181e4f0118
Add parameters to yaml file.
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And use these in the prepare_participants_file function.
2021-11-29 16:57:50 +01:00
39bd244511
[WIP] Prepare yaml files.
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These will be used to create participants files.
2021-11-24 19:11:19 +01:00
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
f340b89c58
Temporary revert PHONE_LOCATIONS BARNETT provider to use R script
2021-09-23 18:16:13 -04:00
a3fb718aea
Refactor PHONE_LOCATIONS DORYAB provider to compute features based on location episodes
2021-09-23 17:40:06 -04:00
a8a178486b
Refactor PHONE_CALLS RAPIDS provider to compute features based on call episodes or events
2021-09-15 10:28:37 -04:00
834bd3b93d
Refactor in Python of Barnett provider
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Co-authored-by: Shirley Hayati <sahayati@ucdavis.edu>
Co-authored-by: JulioV <JulioV@users.noreply.github.com>
2021-08-04 15:33:02 -04:00
Primoz
=
junos
Meng Li
JulioV