junos
23f0aaba3a
Get the name of the questionnaire from Snakefile.
2022-03-16 18:28:57 +01:00
junos
679f00dc19
Enable selecting any questionnaire as target.
2022-03-16 17:55:44 +01:00
junos
1374eda171
Flatten questionnaire ID dict.
2022-03-16 17:38:09 +01:00
junos
19b9da0ba3
Separate function definitions from main.
2022-03-16 16:49:28 +01:00
junos
ef57103bac
Add questionnaire ID key.
2022-03-15 13:41:33 +01:00
junos
5f293211a7
Reformat.
2022-03-15 13:28:51 +01:00
junos
d470eef27e
Add a rule to preprocess and clean ESM.
2022-03-09 18:38:46 +01:00
junos
d4a4bbbff0
Remove unused columns.
2022-03-09 17:58:36 +01:00
junos
085a6d144b
Add files to compute and create an empty script.
2022-03-09 17:32:02 +01:00
junos
42d62f16d0
Add RAPIDS mandatory columns for ESM.
2022-03-09 17:31:37 +01:00
junos
2bef86b1da
Add a format for ESM and add to config.
2022-03-08 15:43:25 +01:00
junos
d8e9a309f7
Rename features and write baseline_interim.
2022-03-08 15:10:36 +01:00
junos
a3a4f04ffe
Setting with : produces NaNs.
2022-03-01 12:02:57 +01:00
junos
aedb8b6785
Write questionnaire data to data/interim.
2022-03-01 12:02:36 +01:00
junos
b5a6317f4b
Calculate JCQ control and demand control ratio.
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Include norms and corresponding quartile.
2022-02-28 18:51:47 +01:00
junos
2fed962644
Calculate JCQ demand score.
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Hardcode question IDs to be reversed.
2022-02-28 18:30:41 +01:00
junos
30ac8b1cd5
Start calculating demand control features.
2022-02-23 19:08:10 +01:00
junos
9a74e74d08
Add the baseline features rule to snakefile.
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Correct age calculation for a single value instead of dataframe.
2022-02-23 18:15:26 +01:00
junos
07da6be398
Add age, gender, and language as features.
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Move calculation of age from merge_baseline_data.py to baseline_features.py.
2022-02-23 18:05:23 +01:00
junos
176367631b
Prepare baseline feature rule.
2022-02-23 11:09:33 +01:00
junos
bf9c764c97
Split baseline data to participants.
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And some csv I/O settings.
2022-02-04 18:37:57 +01:00
junos
16e608db74
First merge baseline datasets.
2022-02-04 18:21:42 +01:00
junos
204f6f50b0
Read the relevant files.
2022-02-04 18:06:02 +01:00
junos
685ed6a546
Set up demographic data download.
2022-02-04 17:37:00 +01:00
junos
afa3b8546f
Mutate data in an R script.
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The Python script did not read the timestamp correctly for some reason. All timestamps were 0.
2022-01-26 16:34:19 +01:00
junos
b17a7eff1a
Deal with inexplicable snakemake failure.
2022-01-07 18:11:38 +01:00
junos
e1499a5ae2
Account for missing device_ids.
2021-12-15 20:41:28 +01:00
junos
5a9252e46e
Merge remote-tracking branch 'origin/master'
2021-12-15 18:32:36 +01:00
junos
352598f3da
Use absolute path to avoid RuleException.
2021-12-15 17:27:13 +01:00
junos
70cada8bb8
Consider a subset of columns when dropping.
2021-12-15 16:14:33 +01:00
junos
d2ed73dccf
Debug ValueError for index.
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See exploration/debug_heatmap.py for illustration.
2021-12-15 16:03:04 +01:00
junos
6f451e05ac
Bring back application_name.
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This column still needs to be in the data, so add it in app_add_name.py.
Later, join categories by package hash.
2021-12-15 12:58:27 +01:00
junos
4485c4c95e
Delete columns we don't have.
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Rename light table.
Correct timesegments.
2021-12-08 20:02:47 +01:00
junos
37b3460b76
Use Empatica wristband numbers as provided in CSV.
2021-12-01 17:20:57 +01:00
junos
22f9e0722d
Start preparing the true usernames CSV file.
2021-12-01 11:29:22 +01:00
junos
0be4cd5a8f
Remove unnecessary library.
2021-11-30 17:08:07 +01:00
junos
04ad2d0b81
Source specific container script.
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It is probably not worth the effort of making this general.
2021-11-29 18:19:47 +01:00
junos
da5ff0f36e
Correct small errors in settings.
2021-11-29 18:04:06 +01:00
junos
35d9779026
Prepare the tibble in requested format.
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Write it to a CSV file.
2021-11-29 17:54:16 +01:00
junos
32025cbd8c
Start with a tibble from CSV.
2021-11-29 17:51:07 +01:00
junos
181e4f0118
Add parameters to yaml file.
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And use these in the prepare_participants_file function.
2021-11-29 16:57:50 +01:00
junos
ab84109d55
Prepare a function to compile participants data.
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It combines functions from container.R
2021-11-24 19:07:56 +01:00
junos
f9863ec622
Fix small mistakes.
2021-11-24 19:01:30 +01:00
junos
c1f56c61e8
Add a function to pull start and end datetimes.
2021-11-24 18:33:06 +01:00
junos
3acf6ece14
Add a function to pull device IDs.
2021-11-24 18:23:53 +01:00
junos
8b2717122d
Add a function to get participants' IDs.
2021-11-24 18:05:17 +01:00
Meng Li
5bad3eb8b5
Data cleaning ( #166 )
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* Refactor data cleaning module: move it from example workflow to main directory
* Replace NAs with 0 in selected event-based features
* Add one step to drop highly correlated features
Co-authored-by: Weiyu <weiyuhuang7@gmail.com>
2021-11-19 10:34:36 -05:00
Meng Li
296960f425
Fix the bug of location doryab features when a participant is moving during the whole time segment
2021-11-18 18:42:19 -05:00
Meng Li
3d34036eae
Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider ( #168 )
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* Add firststeptime and laststeptime features to FITBIT_STEPS_INTRADAY RAPIDS provider
* Update test config files
2021-11-18 18:35:27 -05:00
junos
ed193d2290
Revert "Correct the name of a field."
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This reverts commit b335561a55
.
It was actually correct.
2021-11-17 19:16:35 +01:00