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Travis build mystudy.snakemake deletion fix

pull/95/head
kaguillera 2020-07-29 17:40:42 -04:00
parent a526b32cbe
commit b80801eb43
1 changed files with 4 additions and 1 deletions
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5
tests/Snakefile
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@ -4,7 +4,6 @@ include: "../rules/preprocessing.snakefile"
include: "../rules/features.snakefile"
include: "../rules/models.snakefile"
include: "../rules/reports.snakefile"
include: "../rules/mystudy.snakefile" # You can add snakfiles with rules tailored to your project
files_to_compute = []
@ -67,6 +66,10 @@ if config["APPLICATIONS_FOREGROUND"]["COMPUTE"]:
files_to_compute.extend(expand("data/interim/{pid}/{sensor}_with_datetime_with_genre.csv", pid=config["PIDS"], sensor=config["APPLICATIONS_FOREGROUND"]["DB_TABLE"]))
files_to_compute.extend(expand("data/processed/{pid}/applications_foreground_{day_segment}.csv", pid = config["PIDS"], day_segment = config["APPLICATIONS_FOREGROUND"]["DAY_SEGMENTS"]))
if config["ACTIVITY_RECOGNITION"]["COMPUTE"]:
# TODO add files_to_compute.extend(optional_ar_input(None)), the Android or iOS table gets processed depending on each participant
files_to_compute.extend(expand("data/processed/{pid}/activity_recognition_{day_segment}.csv",pid=config["PIDS"], day_segment = config["ACTIVITY_RECOGNITION"]["DAY_SEGMENTS"]))
rule all:
input:
files_to_compute