From b80801eb436eca0c6acba04d4b82f287400287e4 Mon Sep 17 00:00:00 2001 From: kaguillera Date: Wed, 29 Jul 2020 17:40:42 -0400 Subject: [PATCH] Travis build mystudy.snakemake deletion fix --- tests/Snakefile | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/tests/Snakefile b/tests/Snakefile index ca1b597d..984dd6f4 100644 --- a/tests/Snakefile +++ b/tests/Snakefile @@ -4,7 +4,6 @@ include: "../rules/preprocessing.snakefile" include: "../rules/features.snakefile" include: "../rules/models.snakefile" include: "../rules/reports.snakefile" -include: "../rules/mystudy.snakefile" # You can add snakfiles with rules tailored to your project files_to_compute = [] @@ -67,6 +66,10 @@ if config["APPLICATIONS_FOREGROUND"]["COMPUTE"]: files_to_compute.extend(expand("data/interim/{pid}/{sensor}_with_datetime_with_genre.csv", pid=config["PIDS"], sensor=config["APPLICATIONS_FOREGROUND"]["DB_TABLE"])) files_to_compute.extend(expand("data/processed/{pid}/applications_foreground_{day_segment}.csv", pid = config["PIDS"], day_segment = config["APPLICATIONS_FOREGROUND"]["DAY_SEGMENTS"])) +if config["ACTIVITY_RECOGNITION"]["COMPUTE"]: + # TODO add files_to_compute.extend(optional_ar_input(None)), the Android or iOS table gets processed depending on each participant + files_to_compute.extend(expand("data/processed/{pid}/activity_recognition_{day_segment}.csv",pid=config["PIDS"], day_segment = config["ACTIVITY_RECOGNITION"]["DAY_SEGMENTS"])) + rule all: input: files_to_compute