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Do not calculate accelerometer features. 

Add data cleaning.
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junos 2022-01-07 12:20:51 +01:00
parent e1499a5ae2
commit 2fb068cb8b
1 changed files with 8 additions and 8 deletions
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16
config.yaml
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@ -3,7 +3,7 @@
######################################################################################################################## ########################################################################################################################
# See https://www.rapids.science/latest/setup/configuration/#participant-files # See https://www.rapids.science/latest/setup/configuration/#participant-files
PIDS: [nokia_0000003] PIDS: ['p031', 'p032', 'p033', 'p034', 'p035', 'p036', 'p037', 'p038', 'p039', 'p040', 'p042', 'p043', 'p044', 'p045', 'p046', 'p049', 'p050', 'p052', 'p053', 'p054', 'p055', 'p057', 'p058', 'p059', 'p060', 'p061', 'p062', 'p064', 'p067', 'p068', 'p069', 'p070', 'p071', 'p072', 'p073', 'p074', 'p075', 'p076', 'p077', 'p078', 'p079', 'p080', 'p081', 'p082', 'p083', 'p084', 'p085', 'p086', 'p088', 'p089', 'p090', 'p091', 'p092', 'p093', 'p106', 'p107']
# See https://www.rapids.science/latest/setup/configuration/#automatic-creation-of-participant-files # See https://www.rapids.science/latest/setup/configuration/#automatic-creation-of-participant-files
CREATE_PARTICIPANT_FILES: CREATE_PARTICIPANT_FILES:
@ -67,12 +67,12 @@ PHONE_ACCELEROMETER:
CONTAINER: accelerometer CONTAINER: accelerometer
PROVIDERS: PROVIDERS:
RAPIDS: RAPIDS:
COMPUTE: True COMPUTE: False
FEATURES: ["maxmagnitude", "minmagnitude", "avgmagnitude", "medianmagnitude", "stdmagnitude"] FEATURES: ["maxmagnitude", "minmagnitude", "avgmagnitude", "medianmagnitude", "stdmagnitude"]
SRC_SCRIPT: src/features/phone_accelerometer/rapids/main.py SRC_SCRIPT: src/features/phone_accelerometer/rapids/main.py
PANDA: PANDA:
COMPUTE: True COMPUTE: False
VALID_SENSED_MINUTES: False VALID_SENSED_MINUTES: False
FEATURES: FEATURES:
exertional_activity_episode: ["sumduration", "maxduration", "minduration", "avgduration", "medianduration", "stdduration"] exertional_activity_episode: ["sumduration", "maxduration", "minduration", "avgduration", "medianduration", "stdduration"]
@ -215,7 +215,7 @@ PHONE_CONVERSATION: # TODO Adapt for speech
# See https://www.rapids.science/latest/features/phone-data-yield/ # See https://www.rapids.science/latest/features/phone-data-yield/
PHONE_DATA_YIELD: PHONE_DATA_YIELD:
SENSORS: [PHONE_ACCELEROMETER, SENSORS: [#PHONE_ACCELEROMETER,
PHONE_ACTIVITY_RECOGNITION, PHONE_ACTIVITY_RECOGNITION,
PHONE_APPLICATIONS_FOREGROUND, PHONE_APPLICATIONS_FOREGROUND,
PHONE_APPLICATIONS_NOTIFICATIONS, PHONE_APPLICATIONS_NOTIFICATIONS,
@ -590,17 +590,17 @@ HEATMAP_FEATURE_CORRELATION_MATRIX:
ALL_CLEANING_INDIVIDUAL: ALL_CLEANING_INDIVIDUAL:
PROVIDERS: PROVIDERS:
RAPIDS: RAPIDS:
COMPUTE: False COMPUTE: True
IMPUTE_SELECTED_EVENT_FEATURES: IMPUTE_SELECTED_EVENT_FEATURES:
COMPUTE: True COMPUTE: True
MIN_DATA_YIELDED_MINUTES_TO_IMPUTE: 0.33 MIN_DATA_YIELDED_MINUTES_TO_IMPUTE: 0.33
COLS_NAN_THRESHOLD: 0.3 # set to 1 to disable COLS_NAN_THRESHOLD: 0.3 # set to 1 to disable
COLS_VAR_THRESHOLD: True COLS_VAR_THRESHOLD: True
ROWS_NAN_THRESHOLD: 0.3 # set to 1 to disable ROWS_NAN_THRESHOLD: 1 # set to 1 to disable
DATA_YIELD_FEATURE: RATIO_VALID_YIELDED_HOURS # RATIO_VALID_YIELDED_HOURS or RATIO_VALID_YIELDED_MINUTES DATA_YIELD_FEATURE: RATIO_VALID_YIELDED_HOURS # RATIO_VALID_YIELDED_HOURS or RATIO_VALID_YIELDED_MINUTES
DATA_YIELD_RATIO_THRESHOLD: 0.5 # set to 0 to disable DATA_YIELD_RATIO_THRESHOLD: 0.3 # set to 0 to disable
DROP_HIGHLY_CORRELATED_FEATURES: DROP_HIGHLY_CORRELATED_FEATURES:
COMPUTE: True COMPUTE: False
MIN_OVERLAP_FOR_CORR_THRESHOLD: 0.5 MIN_OVERLAP_FOR_CORR_THRESHOLD: 0.5
CORR_THRESHOLD: 0.95 CORR_THRESHOLD: 0.95
SRC_SCRIPT: src/features/all_cleaning_individual/rapids/main.R SRC_SCRIPT: src/features/all_cleaning_individual/rapids/main.R