diff --git a/config.yaml b/config.yaml index 15a0be79..88bd3c9c 100644 --- a/config.yaml +++ b/config.yaml @@ -3,7 +3,7 @@ ######################################################################################################################## # See https://www.rapids.science/latest/setup/configuration/#participant-files -PIDS: [nokia_0000003] +PIDS: ['p031', 'p032', 'p033', 'p034', 'p035', 'p036', 'p037', 'p038', 'p039', 'p040', 'p042', 'p043', 'p044', 'p045', 'p046', 'p049', 'p050', 'p052', 'p053', 'p054', 'p055', 'p057', 'p058', 'p059', 'p060', 'p061', 'p062', 'p064', 'p067', 'p068', 'p069', 'p070', 'p071', 'p072', 'p073', 'p074', 'p075', 'p076', 'p077', 'p078', 'p079', 'p080', 'p081', 'p082', 'p083', 'p084', 'p085', 'p086', 'p088', 'p089', 'p090', 'p091', 'p092', 'p093', 'p106', 'p107'] # See https://www.rapids.science/latest/setup/configuration/#automatic-creation-of-participant-files CREATE_PARTICIPANT_FILES: @@ -67,12 +67,12 @@ PHONE_ACCELEROMETER: CONTAINER: accelerometer PROVIDERS: RAPIDS: - COMPUTE: True + COMPUTE: False FEATURES: ["maxmagnitude", "minmagnitude", "avgmagnitude", "medianmagnitude", "stdmagnitude"] SRC_SCRIPT: src/features/phone_accelerometer/rapids/main.py PANDA: - COMPUTE: True + COMPUTE: False VALID_SENSED_MINUTES: False FEATURES: exertional_activity_episode: ["sumduration", "maxduration", "minduration", "avgduration", "medianduration", "stdduration"] @@ -215,7 +215,7 @@ PHONE_CONVERSATION: # TODO Adapt for speech # See https://www.rapids.science/latest/features/phone-data-yield/ PHONE_DATA_YIELD: - SENSORS: [PHONE_ACCELEROMETER, + SENSORS: [#PHONE_ACCELEROMETER, PHONE_ACTIVITY_RECOGNITION, PHONE_APPLICATIONS_FOREGROUND, PHONE_APPLICATIONS_NOTIFICATIONS, @@ -590,17 +590,17 @@ HEATMAP_FEATURE_CORRELATION_MATRIX: ALL_CLEANING_INDIVIDUAL: PROVIDERS: RAPIDS: - COMPUTE: False + COMPUTE: True IMPUTE_SELECTED_EVENT_FEATURES: COMPUTE: True MIN_DATA_YIELDED_MINUTES_TO_IMPUTE: 0.33 COLS_NAN_THRESHOLD: 0.3 # set to 1 to disable COLS_VAR_THRESHOLD: True - ROWS_NAN_THRESHOLD: 0.3 # set to 1 to disable + ROWS_NAN_THRESHOLD: 1 # set to 1 to disable DATA_YIELD_FEATURE: RATIO_VALID_YIELDED_HOURS # RATIO_VALID_YIELDED_HOURS or RATIO_VALID_YIELDED_MINUTES - DATA_YIELD_RATIO_THRESHOLD: 0.5 # set to 0 to disable + DATA_YIELD_RATIO_THRESHOLD: 0.3 # set to 0 to disable DROP_HIGHLY_CORRELATED_FEATURES: - COMPUTE: True + COMPUTE: False MIN_OVERLAP_FOR_CORR_THRESHOLD: 0.5 CORR_THRESHOLD: 0.95 SRC_SCRIPT: src/features/all_cleaning_individual/rapids/main.R