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Data Streams
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Data Streams
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aware_csv
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aware_influxdb (beta)
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Mandatory Phone Format
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Mandatory Fitbit Format
< / a >
< / li >
< / ul >
< / nav >
< / li >
< li class = "md-nav__item md-nav__item--nested" >
< input class = "md-nav__toggle md-toggle" data-md-toggle = "__nav_3_4" type = "checkbox" id = "__nav_3_4" >
< label class = "md-nav__link" for = "__nav_3_4" >
Empatica
< span class = "md-nav__icon md-icon" > < / span >
< / label >
< nav class = "md-nav" aria-label = "Empatica" data-md-level = "2" >
< label class = "md-nav__title" for = "__nav_3_4" >
< span class = "md-nav__icon md-icon" > < / span >
Empatica
< / label >
< ul class = "md-nav__list" data-md-scrollfix >
< li class = "md-nav__item" >
< a href = "../datastreams/empatica-zip/" class = "md-nav__link" >
empatica_zip
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "../datastreams/mandatory-empatica-format/" class = "md-nav__link" >
Mandatory Empatica Format
< / a >
< / li >
< / ul >
< / nav >
< / li >
< li class = "md-nav__item" >
< a href = "../datastreams/add-new-data-streams/" class = "md-nav__link" >
Add New Data Streams
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< / a >
< / li >
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< / ul >
< / nav >
< / li >
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< li class = "md-nav__item md-nav__item--section md-nav__item--nested" >
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< input class = "md-nav__toggle md-toggle" data-md-toggle = "__nav_4" type = "checkbox" id = "__nav_4" >
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< label class = "md-nav__link" for = "__nav_4" >
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Behavioral Features
< span class = "md-nav__icon md-icon" > < / span >
< / label >
< nav class = "md-nav" aria-label = "Behavioral Features" data-md-level = "1" >
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< label class = "md-nav__title" for = "__nav_4" >
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< span class = "md-nav__icon md-icon" > < / span >
Behavioral Features
< / label >
< ul class = "md-nav__list" data-md-scrollfix >
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< li class = "md-nav__item" >
< a href = "../features/feature-introduction/" class = "md-nav__link" >
Introduction
< / a >
< / li >
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< li class = "md-nav__item md-nav__item--nested" >
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< input class = "md-nav__toggle md-toggle" data-md-toggle = "__nav_4_2" type = "checkbox" id = "__nav_4_2" >
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< label class = "md-nav__link" for = "__nav_4_2" >
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Phone
< span class = "md-nav__icon md-icon" > < / span >
< / label >
< nav class = "md-nav" aria-label = "Phone" data-md-level = "2" >
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< label class = "md-nav__title" for = "__nav_4_2" >
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< span class = "md-nav__icon md-icon" > < / span >
Phone
< / label >
< ul class = "md-nav__list" data-md-scrollfix >
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< li class = "md-nav__item" >
< a href = "../features/phone-accelerometer/" class = "md-nav__link" >
Phone Accelerometer
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-activity-recognition/" class = "md-nav__link" >
Phone Activity Recognition
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-applications-crashes/" class = "md-nav__link" >
Phone Applications Crashes
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-applications-foreground/" class = "md-nav__link" >
Phone Applications Foreground
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-applications-notifications/" class = "md-nav__link" >
Phone Applications Notifications
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-battery/" class = "md-nav__link" >
Phone Battery
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-bluetooth/" class = "md-nav__link" >
Phone Bluetooth
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-calls/" class = "md-nav__link" >
Phone Calls
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-conversation/" class = "md-nav__link" >
Phone Conversation
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-data-yield/" class = "md-nav__link" >
Phone Data Yield
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-keyboard/" class = "md-nav__link" >
Phone Keyboard
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-light/" class = "md-nav__link" >
Phone Light
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-locations/" class = "md-nav__link" >
Phone Locations
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-log/" class = "md-nav__link" >
Phone Log
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-messages/" class = "md-nav__link" >
Phone Messages
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-screen/" class = "md-nav__link" >
Phone Screen
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-wifi-connected/" class = "md-nav__link" >
Phone WiFI Connected
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/phone-wifi-visible/" class = "md-nav__link" >
Phone WiFI Visible
< / a >
< / li >
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< / ul >
< / nav >
< / li >
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< li class = "md-nav__item md-nav__item--nested" >
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< input class = "md-nav__toggle md-toggle" data-md-toggle = "__nav_4_3" type = "checkbox" id = "__nav_4_3" >
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< label class = "md-nav__link" for = "__nav_4_3" >
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Fitbit
< span class = "md-nav__icon md-icon" > < / span >
< / label >
< nav class = "md-nav" aria-label = "Fitbit" data-md-level = "2" >
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< label class = "md-nav__title" for = "__nav_4_3" >
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< span class = "md-nav__icon md-icon" > < / span >
Fitbit
< / label >
< ul class = "md-nav__list" data-md-scrollfix >
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< li class = "md-nav__item" >
< a href = "../features/fitbit-data-yield/" class = "md-nav__link" >
Fitbit Data Yield
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/fitbit-heartrate-summary/" class = "md-nav__link" >
Fitbit Heart Rate Summary
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/fitbit-heartrate-intraday/" class = "md-nav__link" >
Fitbit Heart Rate Intraday
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/fitbit-sleep-summary/" class = "md-nav__link" >
Fitbit Sleep Summary
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/fitbit-sleep-intraday/" class = "md-nav__link" >
Fitbit Sleep Intraday
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/fitbit-steps-summary/" class = "md-nav__link" >
Fitbit Steps Summary
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/fitbit-steps-intraday/" class = "md-nav__link" >
Fitbit Steps Intraday
< / a >
< / li >
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< / ul >
< / nav >
< / li >
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< li class = "md-nav__item md-nav__item--nested" >
< input class = "md-nav__toggle md-toggle" data-md-toggle = "__nav_4_4" type = "checkbox" id = "__nav_4_4" >
< label class = "md-nav__link" for = "__nav_4_4" >
Empatica
< span class = "md-nav__icon md-icon" > < / span >
< / label >
< nav class = "md-nav" aria-label = "Empatica" data-md-level = "2" >
< label class = "md-nav__title" for = "__nav_4_4" >
< span class = "md-nav__icon md-icon" > < / span >
Empatica
< / label >
< ul class = "md-nav__list" data-md-scrollfix >
< li class = "md-nav__item" >
< a href = "../features/empatica-accelerometer/" class = "md-nav__link" >
Empatica Accelerometer
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "../features/empatica-heartrate/" class = "md-nav__link" >
Empatica Heart Rate
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "../features/empatica-temperature/" class = "md-nav__link" >
Empatica Temperature
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "../features/empatica-electrodermal-activity/" class = "md-nav__link" >
Empatica Electrodermal Activity
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "../features/empatica-blood-volume-pulse/" class = "md-nav__link" >
Empatica Blood Volume Pulse
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "../features/empatica-inter-beat-interval/" class = "md-nav__link" >
Empatica Inter Beat Interval
< / a >
< / li >
< li class = "md-nav__item" >
< a href = "../features/empatica-tags/" class = "md-nav__link" >
Empatica Tags
< / a >
< / li >
< / ul >
< / nav >
< / li >
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< li class = "md-nav__item" >
< a href = "../features/add-new-features/" class = "md-nav__link" >
Add New Features
< / a >
< / li >
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< / ul >
< / nav >
< / li >
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< li class = "md-nav__item md-nav__item--section md-nav__item--nested" >
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< input class = "md-nav__toggle md-toggle" data-md-toggle = "__nav_5" type = "checkbox" id = "__nav_5" >
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< label class = "md-nav__link" for = "__nav_5" >
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Visualizations
< span class = "md-nav__icon md-icon" > < / span >
< / label >
< nav class = "md-nav" aria-label = "Visualizations" data-md-level = "1" >
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< label class = "md-nav__title" for = "__nav_5" >
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< span class = "md-nav__icon md-icon" > < / span >
Visualizations
< / label >
< ul class = "md-nav__list" data-md-scrollfix >
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< li class = "md-nav__item" >
< a href = "../visualizations/data-quality-visualizations/" class = "md-nav__link" >
Data Quality
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../visualizations/feature-visualizations/" class = "md-nav__link" >
Features
< / a >
< / li >
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2020-12-04 22:22:17 +01:00
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< / ul >
< / nav >
< / li >
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< li class = "md-nav__item md-nav__item--section md-nav__item--nested" >
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< input class = "md-nav__toggle md-toggle" data-md-toggle = "__nav_6" type = "checkbox" id = "__nav_6" >
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< label class = "md-nav__link" for = "__nav_6" >
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Analysis Workflows
< span class = "md-nav__icon md-icon" > < / span >
< / label >
< nav class = "md-nav" aria-label = "Analysis Workflows" data-md-level = "1" >
< label class = "md-nav__title" for = "__nav_6" >
< span class = "md-nav__icon md-icon" > < / span >
Analysis Workflows
< / label >
< ul class = "md-nav__list" data-md-scrollfix >
< li class = "md-nav__item" >
< a href = "../workflow-examples/analysis/" class = "md-nav__link" >
Complete Example
< / a >
< / li >
< / ul >
< / nav >
< / li >
< li class = "md-nav__item md-nav__item--section md-nav__item--nested" >
< input class = "md-nav__toggle md-toggle" data-md-toggle = "__nav_7" type = "checkbox" id = "__nav_7" >
< label class = "md-nav__link" for = "__nav_7" >
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Developers
< span class = "md-nav__icon md-icon" > < / span >
< / label >
< nav class = "md-nav" aria-label = "Developers" data-md-level = "1" >
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< label class = "md-nav__title" for = "__nav_7" >
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< span class = "md-nav__icon md-icon" > < / span >
Developers
< / label >
< ul class = "md-nav__list" data-md-scrollfix >
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< li class = "md-nav__item" >
< a href = "../developers/git-flow/" class = "md-nav__link" >
Git Flow
< / a >
< / li >
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2020-12-04 22:22:17 +01:00
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< li class = "md-nav__item" >
< a href = "../developers/remote-support/" class = "md-nav__link" >
Remote Support
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../developers/virtual-environments/" class = "md-nav__link" >
Virtual Environments
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../developers/documentation/" class = "md-nav__link" >
Documentation
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../developers/testing/" class = "md-nav__link" >
Testing
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../developers/test-cases/" class = "md-nav__link" >
Test cases
< / a >
< / li >
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< li class = "md-nav__item" >
< a href = "../developers/validation-schema-config/" class = "md-nav__link" >
Validation schema of config.yaml
< / a >
< / li >
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< / ul >
< / nav >
< / li >
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2020-12-04 22:22:17 +01:00
2021-02-09 20:53:35 +01:00
< li class = "md-nav__item md-nav__item--active md-nav__item--section md-nav__item--nested" >
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< h1 id = "change-log" > Change Log< a class = "headerlink" href = "#change-log" title = "Permanent link" > ¶ < / a > < / h1 >
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< h2 id = "v100" > v1.0.0< a class = "headerlink" href = "#v100" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Add a new < a href = "../setup/overview/" > Overview< / a > page.< / li >
< li > You can < a href = "../datastreams/add-new-data-streams/" > extend< / a > RAPIDS with your own < a href = "../datastreams/data-streams-introduction/" > data streams< / a > . Data streams are data collected with other sensing apps besides AWARE (like Beiwe, mindLAMP), and stored in other data containers (databases, files) besides MySQL.< / li >
< li > Support to analyze Empatica wearable data (thanks to Joe Kim and Brinnae Bent from the < a href = "https://dbdp.org/" > DBDP< / a > )< / li >
< li > Support to analyze AWARE data stored in < a href = "../datastreams/aware-csv/" > CSV files< / a > and < a href = "../datastreams/aware-influxdb/" > InfluxDB< / a > databases< / li >
< li > Support to analyze data collected over < a href = "../setup/configuration/#multiple-timezones" > multiple time zones< / a > < / li >
< li > Support for < a href = "../features/fitbit-sleep-intraday/" > sleep intraday features< / a > from the core team and also from the community (thanks to Stephen Price)< / li >
< li > Users can comment on the documentation (powered by utterances).< / li >
< li > < code > SCR_SCRIPT< / code > and < code > SRC_LANGUAGE< / code > are replaced by < code > SRC_SCRIPT< / code > .< / li >
< li > Add RAPIDS new logo< / li >
< li > Move Citation and Minimal Example page to the Setup section< / li >
< li > Add < code > config.yaml< / code > validation schema and documentation. Now it’ s more difficult to modify the < code > config.yaml< / code > file with invalid values.< / li >
< li > Add new < code > time at home< / code > Doryab location feature< / li >
< li > Add and home coordinates to the location data file so location providers can build features based on it.< / li >
< li > If you are migrating from RAPIDS 0.4.3 or older, check this < a href = "../migrating-from-old-versions/#migrating-from-rapids-04x-or-older" > guide< / a > < / li >
< / ul >
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< h2 id = "v043" > v0.4.3< a class = "headerlink" href = "#v043" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Fix bug when any of the rows from any sensor do not belong a time segment< / li >
< / ul >
2021-02-03 17:42:10 +01:00
< h2 id = "v042" > v0.4.2< a class = "headerlink" href = "#v042" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Update battery testing< / li >
< li > Fix location processing bug when certain columns don’ t exist< / li >
< li > Fix HR intraday bug when minutesonZONE features were 0 < / li >
< li > Update FAQs< / li >
< li > Fix HR summary bug when restinghr=0 (ignore those rows)< / li >
< li > Fix ROG, location entropy and normalized entropy in Doryab location provider< / li >
< li > Remove sampling frequency dependance in Doryab location provider< / li >
< li > Update documentation of Doryab location provider< / li >
< li > Add new < code > FITBIT_DATA_YIELD< / code > < code > RAPIDS< / code > provider< / li >
< li > Deprecate Doryab circadian movement feature until it is fixed< / li >
< / ul >
2021-01-27 23:15:37 +01:00
< h2 id = "v041" > v0.4.1< a class = "headerlink" href = "#v041" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Fix bug when no error message was displayed for an empty < code > [PHONE_DATA_YIELD][SENSORS]< / code > when resampling location data< / li >
< / ul >
2021-01-26 19:42:28 +01:00
< h2 id = "v040" > v0.4.0< a class = "headerlink" href = "#v040" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Add four new phone sensors that can be used for PHONE_DATA_YIELD< / li >
< li > Add code so new feature providers can be added for the new four sensors< / li >
< li > Add new clustering algorithm (OPTICS) for Doryab features< / li >
< li > Update default EPS parameter for Doryab location clustering< / li >
< li > Add clearer error message for invalid phone data yield sensors< / li >
< li > Add ALL_RESAMPLED flag and accuracy limit for location features< / li >
< li > Add FAQ about null characters in phone tables< / li >
< li > Reactivate light and wifi tests and update testing docs< / li >
< li > Fix bug when parsing Fitbit steps data< / li >
< li > Fix bugs when merging features from empty time segments< / li >
< li > Fix minor issues in the documentation< / li >
< / ul >
2021-01-07 22:29:10 +01:00
< h2 id = "v032" > v0.3.2< a class = "headerlink" href = "#v032" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Update docker and linux instructions to use RSPM binary repo for for faster installation< / li >
< li > Update CI to create a release on a tagged push that passes the tests< / li >
< li > Clarify in DB credential configuration that we only support MySQL< / li >
< li > Add Windows installation instructions< / li >
< li > Fix bugs in the create_participants_file script< / li >
< li > Fix bugs in Fitbit data parsing.< / li >
< li > Fixed Doryab location features context of clustering.< / li >
< li > Fixed the wrong shifting while calculating distance in Doryab location features.< / li >
< li > Refactored the haversine function< / li >
< / ul >
2020-12-21 22:32:44 +01:00
< h2 id = "v031" > v0.3.1< a class = "headerlink" href = "#v031" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Update installation docs for RAPIDS’ docker container< / li >
< li > Fix example analysis use of accelerometer data in a plot< / li >
< li > Update FAQ< / li >
< li > Update minimal example documentation< / li >
< li > Minor doc updates< / li >
< / ul >
< h2 id = "v030" > v0.3.0< a class = "headerlink" href = "#v030" title = "Permanent link" > ¶ < / a > < / h2 >
2020-12-21 00:38:09 +01:00
< ul >
< li > Update R and Python virtual environments< / li >
< li > Add GH actions CI support for tests and docker< / li >
< li > Add release and test badges to README< / li >
< / ul >
< h2 id = "v026" > v0.2.6< a class = "headerlink" href = "#v026" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Fix old versions banner on nested pages< / li >
< / ul >
< h2 id = "v025" > v0.2.5< a class = "headerlink" href = "#v025" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Fix docs deploy typo< / li >
< / ul >
< h2 id = "v024" > v0.2.4< a class = "headerlink" href = "#v024" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Fix broken links in landing page and docs deploy< / li >
< / ul >
2020-12-18 17:30:25 +01:00
< h2 id = "v023" > v0.2.3< a class = "headerlink" href = "#v023" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Fix participant IDS in the example analysis workflow< / li >
< / ul >
2020-12-12 23:57:51 +01:00
< h2 id = "v022" > v0.2.2< a class = "headerlink" href = "#v022" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Fix readme link to docs< / li >
< / ul >
2020-12-12 23:37:46 +01:00
< h2 id = "v021" > v0.2.1< a class = "headerlink" href = "#v021" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > FIx link to the most recent version in the old version banner< / li >
< / ul >
2020-12-12 23:19:03 +01:00
< h2 id = "v020" > v0.2.0< a class = "headerlink" href = "#v020" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > Add new < code > PHONE_BLUETOOTH< / code > < code > DORYAB< / code > provider< / li >
< li > Deprecate < code > PHONE_BLUETOOTH< / code > < code > RAPIDS< / code > provider< / li >
< li > Fix bug in < code > filter_data_by_segment< / code > for Python when dataset was empty< / li >
< li > Minor doc updates< / li >
< li > New FAQ item< / li >
< / ul >
2020-12-04 22:22:17 +01:00
< h2 id = "v010" > v0.1.0< a class = "headerlink" href = "#v010" title = "Permanent link" > ¶ < / a > < / h2 >
< ul >
< li > New and more consistent docs (this website). The < a href = "https://rapidspitt.readthedocs.io/en/latest/" > previous docs< / a > are marked as beta < / li >
< li > Consolidate < a href = "../setup/configuration" > configuration< / a > instructions< / li >
< li > Flexible < a href = "../setup/configuration#time-segments" > time segments< / a > < / li >
< li > Simplify Fitbit behavioral feature extraction and < a href = "../features/fitbit-heartrate-summary" > documentation< / a > < / li >
< li > Sensor’ s configuration and output is more consistent< / li >
< li > Update < a href = "../visualizations/data-quality-visualizations" > visualizations< / a > to handle flexible day segments< / li >
< li > Create a RAPIDS < a href = "../setup/execution" > execution< / a > script that allows re-computation of the pipeline after configuration changes< / li >
< li > Add < a href = "../citation" > citation< / a > guide< / li >
< li > Update < a href = "../developers/virtual-environments" > virtual environment< / a > guide< / li >
< li > Update analysis workflow < a href = "../workflow-examples/analysis" > example< / a > < / li >
< li > Add a < a href = "../code_of_conduct" > Code of Conduct< / a > < / li >
< li > Update < a href = "../team" > Team< / a > page< / li >
< / ul >
2021-03-30 21:35:39 +02:00
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