2020-08-28 19:53:00 +02:00
|
|
|
rule join_features_from_providers:
|
|
|
|
input:
|
|
|
|
location_features = find_features_files
|
|
|
|
output:
|
|
|
|
"data/processed/features/{pid}/{sensor_key}.csv"
|
|
|
|
script:
|
|
|
|
"../src/features/join_features_from_providers.R"
|
|
|
|
|
2020-10-08 00:11:06 +02:00
|
|
|
rule resample_episodes:
|
2020-08-31 19:34:15 +02:00
|
|
|
input:
|
2020-10-08 00:11:06 +02:00
|
|
|
"data/interim/{pid}/{sensor}_episodes.csv"
|
2019-10-24 22:27:43 +02:00
|
|
|
output:
|
2020-10-08 00:11:06 +02:00
|
|
|
"data/interim/{pid}/{sensor}_episodes_resampled.csv"
|
2019-10-24 22:27:43 +02:00
|
|
|
script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/features/utils/resample_episodes.R"
|
2019-10-25 16:21:09 +02:00
|
|
|
|
2020-10-08 00:11:06 +02:00
|
|
|
rule resample_episodes_with_datetime:
|
2020-08-28 23:50:49 +02:00
|
|
|
input:
|
2020-10-08 00:11:06 +02:00
|
|
|
sensor_input = "data/interim/{pid}/{sensor}_episodes_resampled.csv",
|
|
|
|
day_segments = "data/interim/day_segments/{pid}_day_segments.csv"
|
2020-08-28 23:50:49 +02:00
|
|
|
params:
|
2020-10-08 00:11:06 +02:00
|
|
|
timezones = None,
|
|
|
|
fixed_timezone = config["READABLE_DATETIME"]["FIXED_TIMEZONE"],
|
|
|
|
day_segments_type = config["DAY_SEGMENTS"]["TYPE"],
|
|
|
|
include_past_periodic_segments = config["DAY_SEGMENTS"]["INCLUDE_PAST_PERIODIC_SEGMENTS"]
|
2020-08-28 23:50:49 +02:00
|
|
|
output:
|
2020-10-08 00:11:06 +02:00
|
|
|
"data/interim/{pid}/{sensor}_episodes_resampled_with_datetime.csv"
|
2020-08-28 23:50:49 +02:00
|
|
|
script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/data/readable_datetime.R"
|
2020-08-28 23:50:49 +02:00
|
|
|
|
2020-10-19 21:07:12 +02:00
|
|
|
rule phone_accelerometer_python_features:
|
2020-08-28 23:50:49 +02:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_data = "data/raw/{pid}/phone_accelerometer_with_datetime.csv",
|
2020-10-13 17:42:36 +02:00
|
|
|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
2019-10-25 16:21:09 +02:00
|
|
|
params:
|
2020-10-19 21:07:12 +02:00
|
|
|
provider = lambda wildcards: config["PHONE_ACCELEROMETER"]["PROVIDERS"][wildcards.provider_key.upper()],
|
2020-10-13 17:42:36 +02:00
|
|
|
provider_key = "{provider_key}",
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_key = "phone_accelerometer"
|
2019-10-25 16:21:09 +02:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_accelerometer_features/phone_accelerometer_python_{provider_key}.csv"
|
2020-10-13 17:42:36 +02:00
|
|
|
script:
|
|
|
|
"../src/features/entry.py"
|
2019-11-05 16:47:55 +01:00
|
|
|
|
2020-10-08 00:11:06 +02:00
|
|
|
rule activity_recognition_episodes:
|
2019-11-05 16:47:55 +01:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_data = "data/raw/{pid}/phone_activity_recognition_with_datetime_unified.csv"
|
2019-11-05 16:47:55 +01:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_activity_recognition_episodes.csv"
|
2019-11-05 16:47:55 +01:00
|
|
|
script:
|
2020-10-19 21:07:12 +02:00
|
|
|
"../src/features/phone_activity_recognition/episodes/activity_recognition_episodes.R"
|
2019-11-05 21:17:20 +01:00
|
|
|
|
2020-10-19 21:07:12 +02:00
|
|
|
rule phone_activity_recognition_python_features:
|
2019-11-27 21:27:48 +01:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_episodes = "data/interim/{pid}/phone_activity_recognition_episodes_resampled_with_datetime.csv",
|
2020-10-08 00:11:06 +02:00
|
|
|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
|
|
|
params:
|
2020-10-19 21:07:12 +02:00
|
|
|
provider = lambda wildcards: config["PHONE_ACTIVITY_RECOGNITION"]["PROVIDERS"][wildcards.provider_key.upper()],
|
2020-10-08 00:11:06 +02:00
|
|
|
provider_key = "{provider_key}",
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_key = "phone_activity_recognition"
|
2019-11-27 21:27:48 +01:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_activity_recognition_features/phone_activity_recognition_python_{provider_key}.csv"
|
2020-09-19 02:25:29 +02:00
|
|
|
script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/features/entry.py"
|
2020-09-19 02:25:29 +02:00
|
|
|
|
2020-10-19 21:07:12 +02:00
|
|
|
rule phone_applications_foreground_python_features:
|
2020-09-19 02:25:29 +02:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_data = "data/raw/{pid}/phone_applications_foreground_with_datetime_with_categories.csv",
|
2020-10-08 00:11:06 +02:00
|
|
|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
2020-09-19 02:25:29 +02:00
|
|
|
params:
|
2020-10-19 21:07:12 +02:00
|
|
|
provider = lambda wildcards: config["PHONE_APPLICATIONS_FOREGROUND"]["PROVIDERS"][wildcards.provider_key.upper()],
|
2020-10-08 00:11:06 +02:00
|
|
|
provider_key = "{provider_key}",
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_key = "phone_applications_foreground"
|
2020-09-19 02:25:29 +02:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_applications_foreground_features/phone_applications_foreground_python_{provider_key}.csv"
|
2019-11-27 21:53:37 +01:00
|
|
|
script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/features/entry.py"
|
2020-04-21 00:05:54 +02:00
|
|
|
|
2020-10-08 00:11:06 +02:00
|
|
|
rule battery_episodes:
|
2020-04-21 00:05:54 +02:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/raw/{pid}/phone_battery_raw.csv"
|
2019-11-05 21:17:20 +01:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_battery_episodes.csv"
|
2019-11-05 21:17:20 +01:00
|
|
|
script:
|
2020-10-19 21:07:12 +02:00
|
|
|
"../src/features/phone_battery/episodes/battery_episodes.R"
|
2019-11-06 18:19:30 +01:00
|
|
|
|
2020-10-19 21:07:12 +02:00
|
|
|
rule phone_battery_python_features:
|
2020-07-16 20:26:43 +02:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_episodes = "data/interim/{pid}/phone_battery_episodes_resampled_with_datetime.csv",
|
2020-09-14 20:21:36 +02:00
|
|
|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
2020-07-16 20:26:43 +02:00
|
|
|
params:
|
2020-10-19 21:07:12 +02:00
|
|
|
provider = lambda wildcards: config["PHONE_BATTERY"]["PROVIDERS"][wildcards.provider_key.upper()],
|
2020-10-08 00:11:06 +02:00
|
|
|
provider_key = "{provider_key}",
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_key = "phone_battery"
|
2020-07-16 20:26:43 +02:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_battery_features/phone_battery_python_{provider_key}.csv"
|
2020-07-16 20:26:43 +02:00
|
|
|
script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/features/entry.py"
|
2020-07-16 20:26:43 +02:00
|
|
|
|
2020-10-19 21:07:12 +02:00
|
|
|
rule phone_bluetooth_r_features:
|
2020-08-31 23:08:26 +02:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_data = "data/raw/{pid}/phone_bluetooth_with_datetime.csv",
|
2020-09-14 20:21:36 +02:00
|
|
|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
2020-08-31 23:08:26 +02:00
|
|
|
params:
|
2020-10-19 21:07:12 +02:00
|
|
|
provider = lambda wildcards: config["PHONE_BLUETOOTH"]["PROVIDERS"][wildcards.provider_key.upper()],
|
2020-10-08 00:11:06 +02:00
|
|
|
provider_key = "{provider_key}",
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_key = "phone_bluetooth"
|
2020-08-31 23:08:26 +02:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_bluetooth_features/phone_bluetooth_r_{provider_key}.csv"
|
2020-08-31 23:08:26 +02:00
|
|
|
script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/features/entry.R"
|
2020-08-31 23:08:26 +02:00
|
|
|
|
2020-10-08 00:11:06 +02:00
|
|
|
rule calls_r_features:
|
2019-11-08 18:18:21 +01:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_data = "data/raw/{pid}/phone_calls_with_datetime_unified.csv",
|
2020-09-29 23:13:34 +02:00
|
|
|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
|
|
|
params:
|
2020-10-19 21:07:12 +02:00
|
|
|
provider = lambda wildcards: config["PHONE_CALLS"]["PROVIDERS"][wildcards.provider_key.upper()],
|
2020-10-08 00:11:06 +02:00
|
|
|
provider_key = "{provider_key}",
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_key = "phone_calls"
|
2019-11-08 18:18:21 +01:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_calls_features/phone_calls_r_{provider_key}.csv"
|
2020-09-19 02:25:29 +02:00
|
|
|
script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/features/entry.R"
|
2020-09-19 02:25:29 +02:00
|
|
|
|
2020-10-08 00:11:06 +02:00
|
|
|
rule conversation_python_features:
|
2020-09-19 02:25:29 +02:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_data = "data/raw/{pid}/phone_conversation_with_datetime_unified.csv",
|
2020-09-19 02:25:29 +02:00
|
|
|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
|
|
|
params:
|
2020-10-19 21:07:12 +02:00
|
|
|
provider = lambda wildcards: config["PHONE_CONVERSATION"]["PROVIDERS"][wildcards.provider_key.upper()],
|
2020-10-08 00:11:06 +02:00
|
|
|
provider_key = "{provider_key}",
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_key = "phone_conversation"
|
2019-11-27 20:25:17 +01:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_conversation_features/phone_conversation_python_{provider_key}.csv"
|
2019-11-27 20:25:17 +01:00
|
|
|
script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/features/entry.py"
|
2020-01-14 15:51:39 +01:00
|
|
|
|
2020-10-19 21:07:12 +02:00
|
|
|
rule phone_light_python_features:
|
2020-01-14 15:51:39 +01:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_data = "data/raw/{pid}/phone_light_with_datetime.csv",
|
2020-09-14 20:21:36 +02:00
|
|
|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
2020-01-14 15:51:39 +01:00
|
|
|
params:
|
2020-10-19 21:07:12 +02:00
|
|
|
provider = lambda wildcards: config["PHONE_LIGHT"]["PROVIDERS"][wildcards.provider_key.upper()],
|
2020-10-08 00:11:06 +02:00
|
|
|
provider_key = "{provider_key}",
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_key = "phone_light"
|
2020-09-01 18:01:24 +02:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_light_features/phone_light_python_{provider_key}.csv"
|
2020-01-14 15:51:39 +01:00
|
|
|
script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/features/entry.py"
|
2020-01-15 20:15:24 +01:00
|
|
|
|
2020-10-19 21:07:12 +02:00
|
|
|
rule phone_locations_r_features:
|
2020-06-19 07:27:28 +02:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_data = "data/interim/{pid}/phone_locations_processed_with_datetime.csv",
|
2020-09-14 20:21:36 +02:00
|
|
|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
2020-06-19 07:27:28 +02:00
|
|
|
params:
|
2020-10-19 21:07:12 +02:00
|
|
|
provider = lambda wildcards: config["PHONE_LOCATIONS"]["PROVIDERS"][wildcards.provider_key.upper()],
|
2020-10-08 00:11:06 +02:00
|
|
|
provider_key = "{provider_key}",
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_key = "phone_locations"
|
2020-09-01 23:07:07 +02:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_locations_features/phone_locations_r_{provider_key}.csv"
|
2020-09-01 23:07:07 +02:00
|
|
|
script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/features/entry.R"
|
2020-09-01 23:07:07 +02:00
|
|
|
|
2020-10-19 21:07:12 +02:00
|
|
|
rule phone_locations_python_features:
|
2020-09-01 23:07:07 +02:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_data = "data/interim/{pid}/phone_locations_processed_with_datetime.csv",
|
2020-09-14 20:21:36 +02:00
|
|
|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
2020-09-01 23:07:07 +02:00
|
|
|
params:
|
2020-10-19 21:07:12 +02:00
|
|
|
provider = lambda wildcards: config["PHONE_LOCATIONS"]["PROVIDERS"][wildcards.provider_key.upper()],
|
2020-10-08 00:11:06 +02:00
|
|
|
provider_key = "{provider_key}",
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_key = "phone_locations"
|
2020-06-19 07:27:28 +02:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_locations_features/phone_locations_python_{provider_key}.csv"
|
2020-06-19 07:27:28 +02:00
|
|
|
script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/features/entry.py"
|
2020-06-19 07:27:28 +02:00
|
|
|
|
2020-10-19 21:07:12 +02:00
|
|
|
rule phone_messages_r_features:
|
2020-01-15 20:15:24 +01:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_data = "data/raw/{pid}/phone_messages_with_datetime.csv",
|
2020-10-08 00:11:06 +02:00
|
|
|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
2020-01-15 20:15:24 +01:00
|
|
|
params:
|
2020-10-19 21:07:12 +02:00
|
|
|
provider = lambda wildcards: config["PHONE_MESSAGES"]["PROVIDERS"][wildcards.provider_key.upper()],
|
2020-10-08 00:11:06 +02:00
|
|
|
provider_key = "{provider_key}",
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_key = "phone_messages"
|
2020-01-15 20:15:24 +01:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_messages_features/phone_messages_r_{provider_key}.csv"
|
2020-01-15 20:15:24 +01:00
|
|
|
script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/features/entry.R"
|
2020-01-29 22:22:53 +01:00
|
|
|
|
2020-10-08 00:11:06 +02:00
|
|
|
rule screen_episodes:
|
2020-09-01 21:25:35 +02:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
screen = "data/raw/{pid}/phone_screen_with_datetime_unified.csv"
|
2020-10-08 00:11:06 +02:00
|
|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_screen_episodes.csv"
|
2020-10-08 00:11:06 +02:00
|
|
|
script:
|
2020-10-19 21:07:12 +02:00
|
|
|
"../src/features/phone_screen/episodes/screen_episodes.R"
|
2020-10-08 00:11:06 +02:00
|
|
|
|
2020-10-19 21:07:12 +02:00
|
|
|
rule phone_screen_python_features:
|
2020-10-08 00:11:06 +02:00
|
|
|
input:
|
2020-10-19 21:07:12 +02:00
|
|
|
sensor_episodes = "data/interim/{pid}/phone_screen_episodes_resampled_with_datetime.csv",
|
2020-09-14 20:21:36 +02:00
|
|
|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
2020-09-01 21:25:35 +02:00
|
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params:
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2020-10-19 21:07:12 +02:00
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provider = lambda wildcards: config["PHONE_SCREEN"]["PROVIDERS"][wildcards.provider_key.upper()],
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2020-10-08 00:11:06 +02:00
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provider_key = "{provider_key}",
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2020-10-19 21:07:12 +02:00
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sensor_key = "phone_screen"
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2020-02-07 17:52:55 +01:00
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output:
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2020-10-19 21:07:12 +02:00
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"data/interim/{pid}/phone_screen_features/phone_screen_python_{provider_key}.csv"
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2020-10-08 00:11:06 +02:00
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script:
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"../src/features/entry.py"
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2020-02-07 17:52:55 +01:00
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2020-10-19 21:07:12 +02:00
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rule phone_wifi_connected_r_features:
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2020-09-01 00:51:06 +02:00
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input:
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2020-10-19 21:07:12 +02:00
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sensor_data = "data/raw/{pid}/phone_wifi_connected_with_datetime.csv",
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2020-09-14 20:21:36 +02:00
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day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
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2020-09-01 00:51:06 +02:00
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params:
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2020-10-19 21:07:12 +02:00
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provider = lambda wildcards: config["PHONE_WIFI_CONNECTED"]["PROVIDERS"][wildcards.provider_key.upper()],
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2020-10-08 00:11:06 +02:00
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provider_key = "{provider_key}",
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2020-10-19 21:07:12 +02:00
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sensor_key = "phone_wifi_connected"
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2020-09-01 00:51:06 +02:00
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output:
|
2020-10-19 21:07:12 +02:00
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|
|
"data/interim/{pid}/phone_wifi_connected_features/phone_wifi_connected_r_{provider_key}.csv"
|
2020-09-01 00:51:06 +02:00
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script:
|
2020-10-08 00:11:06 +02:00
|
|
|
"../src/features/entry.R"
|
2020-09-01 00:51:06 +02:00
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|
2020-10-19 21:07:12 +02:00
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|
rule phone_wifi_visible_r_features:
|
2020-09-01 00:51:06 +02:00
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input:
|
2020-10-19 21:07:12 +02:00
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|
|
sensor_data = "data/raw/{pid}/phone_wifi_visible_with_datetime.csv",
|
2020-09-14 20:21:36 +02:00
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|
day_segments_labels = "data/interim/day_segments/{pid}_day_segments_labels.csv"
|
2020-05-15 23:51:00 +02:00
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|
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params:
|
2020-10-19 21:07:12 +02:00
|
|
|
provider = lambda wildcards: config["PHONE_WIFI_VISIBLE"]["PROVIDERS"][wildcards.provider_key.upper()],
|
2020-10-08 00:11:06 +02:00
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|
|
provider_key = "{provider_key}",
|
2020-10-19 21:07:12 +02:00
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|
|
sensor_key = "phone_wifi_visible"
|
2020-05-15 23:51:00 +02:00
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|
|
output:
|
2020-10-19 21:07:12 +02:00
|
|
|
"data/interim/{pid}/phone_wifi_visible_features/phone_wifi_visible_r_{provider_key}.csv"
|
2020-05-15 23:51:00 +02:00
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|
|
script:
|
2020-10-19 21:07:12 +02:00
|
|
|
"../src/features/entry.R"
|
2020-05-15 23:51:00 +02:00
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|
|
|
2020-04-08 21:31:43 +02:00
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|
|
rule fitbit_heartrate_features:
|
2020-02-07 17:35:15 +01:00
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|
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input:
|
2020-05-15 23:51:00 +02:00
|
|
|
heartrate_summary_data = "data/raw/{pid}/fitbit_heartrate_summary_with_datetime.csv",
|
|
|
|
heartrate_intraday_data = "data/raw/{pid}/fitbit_heartrate_intraday_with_datetime.csv"
|
2020-02-07 17:35:15 +01:00
|
|
|
params:
|
|
|
|
day_segment = "{day_segment}",
|
2020-06-12 22:04:03 +02:00
|
|
|
summary_features = config["HEARTRATE"]["SUMMARY_FEATURES"],
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|
|
intraday_features = config["HEARTRATE"]["INTRADAY_FEATURES"]
|
2020-02-07 17:35:15 +01:00
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|
|
output:
|
|
|
|
"data/processed/{pid}/fitbit_heartrate_{day_segment}.csv"
|
|
|
|
script:
|
2020-04-08 21:31:43 +02:00
|
|
|
"../src/features/fitbit_heartrate_features.py"
|
2020-02-07 17:35:15 +01:00
|
|
|
|
2020-04-03 23:03:45 +02:00
|
|
|
rule fitbit_step_features:
|
2020-01-29 22:22:53 +01:00
|
|
|
input:
|
2020-06-24 19:33:58 +02:00
|
|
|
step_data = "data/raw/{pid}/fitbit_step_intraday_with_datetime.csv",
|
|
|
|
sleep_data = optional_steps_sleep_input
|
2020-01-29 22:22:53 +01:00
|
|
|
params:
|
|
|
|
day_segment = "{day_segment}",
|
2020-04-03 23:03:45 +02:00
|
|
|
features_all_steps = config["STEP"]["FEATURES"]["ALL_STEPS"],
|
|
|
|
features_sedentary_bout = config["STEP"]["FEATURES"]["SEDENTARY_BOUT"],
|
|
|
|
features_active_bout = config["STEP"]["FEATURES"]["ACTIVE_BOUT"],
|
2020-03-09 20:59:51 +01:00
|
|
|
threshold_active_bout = config["STEP"]["THRESHOLD_ACTIVE_BOUT"],
|
2020-06-24 19:33:58 +02:00
|
|
|
include_zero_step_rows = config["STEP"]["INCLUDE_ZERO_STEP_ROWS"],
|
|
|
|
exclude_sleep = config["STEP"]["EXCLUDE_SLEEP"]["EXCLUDE"],
|
|
|
|
exclude_sleep_type = config["STEP"]["EXCLUDE_SLEEP"]["TYPE"],
|
|
|
|
exclude_sleep_fixed_start = config["STEP"]["EXCLUDE_SLEEP"]["FIXED"]["START"],
|
|
|
|
exclude_sleep_fixed_end = config["STEP"]["EXCLUDE_SLEEP"]["FIXED"]["END"],
|
2020-01-29 22:22:53 +01:00
|
|
|
output:
|
|
|
|
"data/processed/{pid}/fitbit_step_{day_segment}.csv"
|
|
|
|
script:
|
2020-04-03 23:03:45 +02:00
|
|
|
"../src/features/fitbit_step_features.py"
|
2020-04-13 19:24:52 +02:00
|
|
|
|
2020-05-15 23:51:00 +02:00
|
|
|
rule fitbit_sleep_features:
|
|
|
|
input:
|
|
|
|
sleep_summary_data = "data/raw/{pid}/fitbit_sleep_summary_with_datetime.csv",
|
|
|
|
sleep_intraday_data = "data/raw/{pid}/fitbit_sleep_intraday_with_datetime.csv"
|
2020-04-13 19:24:52 +02:00
|
|
|
params:
|
|
|
|
day_segment = "{day_segment}",
|
2020-06-13 00:44:05 +02:00
|
|
|
summary_features = config["SLEEP"]["SUMMARY_FEATURES"],
|
|
|
|
sleep_types = config["SLEEP"]["SLEEP_TYPES"]
|
2020-04-13 19:24:52 +02:00
|
|
|
output:
|
2020-05-15 23:51:00 +02:00
|
|
|
"data/processed/{pid}/fitbit_sleep_{day_segment}.csv"
|
2020-04-13 19:24:52 +02:00
|
|
|
script:
|
2020-05-15 23:51:00 +02:00
|
|
|
"../src/features/fitbit_sleep_features.py"
|