2020-11-09 18:42:20 +01:00
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RAPIDS
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Testing
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Initializing search
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carissalow/rapids
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RAPIDS
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carissalow/rapids
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Home
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Setup
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Setup
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File Structure
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Installation
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Configuration
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Execution
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Example Workflows
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Example Workflows
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Minimal
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Analysis
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Behavioral Features
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Behavioral Features
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< a href = "../../features/feature-introduction/" class = "md-nav__link" >
Introduction
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Phone
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< nav class = "md-nav" aria-label = "Phone" data-md-level = "2" >
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< span class = "md-nav__icon md-icon" > < / span >
Phone
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< ul class = "md-nav__list" data-md-scrollfix >
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< a href = "../../features/phone-accelerometer/" class = "md-nav__link" >
Phone Accelerometer
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< li class = "md-nav__item" >
< a href = "../../features/phone-activity-recognition/" class = "md-nav__link" >
Phone Activity Recognition
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< li class = "md-nav__item" >
< a href = "../../features/phone-applications-foreground/" class = "md-nav__link" >
Phone Applications Foreground
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< / li >
< li class = "md-nav__item" >
< a href = "../../features/phone-battery/" class = "md-nav__link" >
Phone Battery
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< / li >
< li class = "md-nav__item" >
< a href = "../../features/phone-bluetooth/" class = "md-nav__link" >
Phone Bluetooth
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< / li >
< li class = "md-nav__item" >
< a href = "../../features/phone-calls/" class = "md-nav__link" >
Phone Calls
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< li class = "md-nav__item" >
< a href = "../../features/phone-conversation/" class = "md-nav__link" >
Phone Conversation
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< / li >
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< li class = "md-nav__item" >
< a href = "../../features/phone-data-yield/" class = "md-nav__link" >
Phone Data Yield
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< / li >
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< li class = "md-nav__item" >
< a href = "../../features/phone-light/" class = "md-nav__link" >
Phone Light
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< a href = "../../features/phone-locations/" class = "md-nav__link" >
Phone Locations
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< a href = "../../features/phone-messages/" class = "md-nav__link" >
Phone Messages
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< a href = "../../features/phone-screen/" class = "md-nav__link" >
Phone Screen
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< a href = "../../features/phone-wifi-connected/" class = "md-nav__link" >
Phone WiFI Connected
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< li class = "md-nav__item" >
< a href = "../../features/phone-wifi-visible/" class = "md-nav__link" >
Phone WiFI Visible
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< / nav >
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< li class = "md-nav__item md-nav__item--nested" >
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< label class = "md-nav__link" for = "nav-4-3" >
Fitbit
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< nav class = "md-nav" aria-label = "Fitbit" data-md-level = "2" >
< label class = "md-nav__title" for = "nav-4-3" >
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Fitbit
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< a href = "../../features/fitbit-heartrate-summary/" class = "md-nav__link" >
Fitbit Heart Rate Summary
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< li class = "md-nav__item" >
< a href = "../../features/fitbit-heartrate-intraday/" class = "md-nav__link" >
Fitbit Heart Rate Intraday
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< / li >
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< li class = "md-nav__item" >
< a href = "../../features/fitbit-sleep-summary/" class = "md-nav__link" >
Fitbit Sleep Summary
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< / li >
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< li class = "md-nav__item" >
< a href = "../../features/fitbit-steps-summary/" class = "md-nav__link" >
Fitbit Steps Summary
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< a href = "../../features/fitbit-steps-intraday/" class = "md-nav__link" >
Fitbit Steps Intraday
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< a href = "../../features/add-new-features/" class = "md-nav__link" >
Add New Features
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< / li >
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Visualizations
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< nav class = "md-nav" aria-label = "Visualizations" data-md-level = "1" >
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< h1 id = "testing" > Testing< a class = "headerlink" href = "#testing" title = "Permanent link" > ¶ < / a > < / h1 >
< p > The following is a simple guide to testing RAPIDS. All files necessary for testing are stored in the < code > /tests< / code > directory< / p >
< h2 id = "steps-for-testing" > Steps for Testing< a class = "headerlink" href = "#steps-for-testing" title = "Permanent link" > ¶ < / a > < / h2 >
< ol >
< li > To begin testing RAPIDS place the fake raw input data < code > csv< / code > files in
< code > tests/data/raw/< / code > . The fake participant files should be placed in
< code > tests/data/external/< / code > . The expected output files of RAPIDS after
processing the input data should be placed in
< code > tests/data/processesd/< / code > .< / li >
< li > The Snakemake rule(s) that are to be tested must be placed in the
< code > tests/Snakemake< / code > file. The current < code > tests/Snakemake< / code > is a good
example of how to define them. (At the time of writing this
documentation the snakefile contains rules messages (SMS), calls and
screen)< / li >
< li > Edit the < code > tests/settings/config.yaml< / code > . Add and/or remove the rules
to be run for testing from the < code > forcerun< / code > list.< / li >
< li > Edit the < code > tests/settings/testing_config.yaml< / code > with the necessary
configuration settings for running the rules to be tested.< / li >
< li > Add any additional testscripts in < code > tests/scripts< / code > .< / li >
< li > Uncomment or comment off lines in the testing shell script
< code > tests/scripts/run_tests.sh< / code > .< / li >
< li >
< p > Run the testing shell script.< / p >
< div class = "highlight" > < pre > < span > < / span > < code > tests/scripts/run_tests.sh
< / code > < / pre > < / div >
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< p > The following is a snippet of the output you should see after running your test.< / p >
< div class = "highlight" > < pre > < span > < / span > < code > test_sensors_files_exist < span class = "o" > (< / span > test_sensor_features.TestSensorFeatures< span class = "o" > )< / span > ... ok
test_sensors_features_calculations < span class = "o" > (< / span > test_sensor_features.TestSensorFeatures< span class = "o" > )< / span > ... < span class = "nv" > FAIL< / span >
< span class = "o" > ======================================================================< / span >
FAIL: test_sensors_features_calculations < span class = "o" > (< / span > test_sensor_features.TestSensorFeatures< span class = "o" > )< / span >
----------------------------------------------------------------------
< / code > < / pre > < / div >
< p > The results above show that the first test < code > test_sensors_files_exist< / code > passed while < code > test_sensors_features_calculations< / code > failed. In addition you should get the traceback of the failure (not shown here). For more information on how to implement test scripts and use unittest please see < a href = "https://docs.python.org/3.7/library/unittest.html#command-line-interface" > Unittest Documentation< / a > < / p >
< p > Testing of the RAPIDS sensors and features is a work-in-progress. Please see < code class = "interpreted-text" role = "ref" > test-cases< / code > for a list of sensors and features that have testing currently available.< / p >
< p > Currently the repository is set up to test a number of sensors out of the box by simply running the < code > tests/scripts/run_tests.sh< / code > command once the RAPIDS python environment is active.< / p >
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