If you just don't want to clutter your git repo, below it's a patch does the following:
* If you set autoindex_commit to 0 in your ikiwiki.setup file, we *do* place auto-generated markdown files in the **wiki source** but *not* in the **repo**
* If you set autoindex_commit to 1 (this is the default), auto-generated index files will be put in the repo provided you enabled rcs backend.
`autoindex_commit => 0` would be nice, but uncommited files are definitely not.
<pre>
remote: From /srv/git/test3
remote: 3047077..1df636c master -> origin/master
remote: error: Untracked working tree file 'test.mdwn' would be overwritten by merge. Aborting
remote: 'git pull --prune origin' failed: at /usr/share/perl5/IkiWiki/Plugin/git.pm line 201.
</pre>
It'd be nice if we were able to notice directories with no associated compilable markup files and compile a simple map directive straight to HTML without any intermediate markup file being involved at all. -- JoeRayhawk