import pandas as pd import features.esm QUESTIONNAIRE_ID_SAM = { "event_stress": 87, "event_threat": 88, "event_challenge": 89, "event_time": 90, "event_duration": 91, "event_work_related": 92, "period_stress": 93, } QUESTIONNAIRE_ID_SAM_LOW = min(QUESTIONNAIRE_ID_SAM.values()) QUESTIONNAIRE_ID_SAM_HIGH = max(QUESTIONNAIRE_ID_SAM.values()) GROUP_QUESTIONNAIRES_BY = [ "participant_id", "device_id", "esm_session", "questionnaire_id", ] # Each questionnaire occurs only once within each esm_session on the same device within the same participant. def extract_stressful_events(df_esm: pd.DataFrame) -> pd.DataFrame: # 0. Select only questions from Stress Appraisal Measure. df_esm_preprocessed = features.esm.preprocess_esm(df_esm) df_esm_sam = df_esm_preprocessed[ (df_esm_preprocessed["questionnaire_id"] >= QUESTIONNAIRE_ID_SAM_LOW) & (df_esm_preprocessed["questionnaire_id"] <= QUESTIONNAIRE_ID_SAM_HIGH) ] df_esm_sam_clean = features.esm.clean_up_esm(df_esm_sam) # 1. df_esm_event_threat_challenge_mean_wide = calculate_threat_challenge_means( df_esm_sam_clean ) # 2. df_esm_event_stress = detect_stressful_event(df_esm_sam_clean) # Join to the previously calculated features related to the events. df_esm_events = df_esm_event_threat_challenge_mean_wide.join( df_esm_event_stress[ GROUP_QUESTIONNAIRES_BY + ["event_present", "event_stressfulness"] ].set_index(GROUP_QUESTIONNAIRES_BY) ) # 3. df_esm_event_time = convert_event_time(df_esm_sam_clean) df_esm_events = df_esm_events.join( df_esm_event_time[GROUP_QUESTIONNAIRES_BY.append("event_time")].set_index( GROUP_QUESTIONNAIRES_BY ) ) # 4. df_esm_event_duration = extract_event_duration(df_esm_sam_clean) df_esm_events = df_esm_events.join( df_esm_event_duration[ GROUP_QUESTIONNAIRES_BY + ["event_duration", "event_duration_info"] ].set_index(GROUP_QUESTIONNAIRES_BY) ) return df_esm_events def calculate_threat_challenge_means(df_esm_sam_clean: pd.DataFrame) -> pd.DataFrame: # Select only threat and challenge assessments for events df_esm_event_threat_challenge = df_esm_sam_clean[ ( df_esm_sam_clean["questionnaire_id"] == QUESTIONNAIRE_ID_SAM.get("event_threat") ) | ( df_esm_sam_clean["questionnaire_id"] == QUESTIONNAIRE_ID_SAM.get("event_challenge") ) ] # Calculate mean of threat and challenge subscales for each ESM session. df_esm_event_threat_challenge_mean = ( df_esm_event_threat_challenge.groupby(GROUP_QUESTIONNAIRES_BY) .esm_user_answer_numeric.agg("mean") .reset_index() .rename(columns={"esm_user_answer_numeric": "esm_numeric_mean"}) ) # Rename questionnaire ID to indicate their names. df_esm_event_threat_challenge_mean[ "event_subscale" ] = df_esm_event_threat_challenge_mean.questionnaire_id.astype( "category" ).cat.rename_categories( { QUESTIONNAIRE_ID_SAM.get("event_threat"): "threat_mean", QUESTIONNAIRE_ID_SAM.get("event_challenge"): "challenge_mean", } ) # Pivot a table so that each ESM session is represented by one row with threat and challenge means as two columns. df_esm_event_threat_challenge_mean_wide = pd.pivot( df_esm_event_threat_challenge_mean, index=GROUP_QUESTIONNAIRES_BY, columns=["event_subscale"], values=["esm_numeric_mean"], ) return df_esm_event_threat_challenge_mean_wide def detect_stressful_event(df_esm_sam_clean: pd.DataFrame) -> pd.DataFrame: df_esm_event_stress = df_esm_sam_clean[ df_esm_sam_clean["questionnaire_id"] == QUESTIONNAIRE_ID_SAM.get("event_stress") ] df_esm_event_stress = df_esm_event_stress.assign( event_present=lambda x: x.esm_user_answer_numeric > 0, event_stressfulness=lambda x: x.esm_user_answer_numeric, ) return df_esm_event_stress def convert_event_time(df_esm_sam_clean: pd.DataFrame) -> pd.DataFrame: df_esm_event_time = df_esm_sam_clean[ df_esm_sam_clean["questionnaire_id"] == QUESTIONNAIRE_ID_SAM.get("event_time") ].assign( event_time=lambda x: pd.to_datetime( x.esm_user_answer, errors="coerce", infer_datetime_format=True, exact=True ) ) return df_esm_event_time def extract_event_duration(df_esm_sam_clean: pd.DataFrame) -> pd.DataFrame: df_esm_event_duration = df_esm_sam_clean[ df_esm_sam_clean["questionnaire_id"] == QUESTIONNAIRE_ID_SAM.get("event_duration") ].assign( event_duration=lambda x: pd.to_datetime( x.esm_user_answer.str.slice(start=0, stop=-6), errors="coerce" ).dt.time ) # TODO Explore the values recorded in event_duration and possibly fix mistakes. # For example, participants reported setting 23:50:00 instead of 00:50:00. # For the events that no duration was found (i.e. event_duration = NaT), # we can determine whether: # - this event is still going on ("1 - It is still going on") # - the participant couldn't remember it's duration ("0 - I do not remember") # Generally, these answers were converted to esm_user_answer_numeric in clean_up_esm, # but only the numeric types of questions and answers. # Since this was of "datetime" type, convert these specific answers here again. df_esm_event_duration[ df_esm_event_duration.event_duration.isna() ] = df_esm_event_duration[df_esm_event_duration.event_duration.isna()].assign( event_duration_info=lambda x: x.esm_user_answer.str.slice(stop=1).astype( int ) ) return df_esm_event_duration # TODO: How many questions about the stressfulness of the period were asked and how does this relate to events?