# -*- coding: utf-8 -*- # --- # jupyter: # jupytext: # formats: ipynb,py:percent # text_representation: # extension: .py # format_name: percent # format_version: '1.3' # jupytext_version: 1.13.0 # kernelspec: # display_name: straw2analysis # language: python # name: straw2analysis # --- # %% import os import sys import datetime import math import seaborn as sns nb_dir = os.path.split(os.getcwd())[0] if nb_dir not in sys.path: sys.path.append(nb_dir) import participants.query_db from features.esm import * from features.esm_JCQ import * from features.esm_SAM import * from IPython.core.interactiveshell import InteractiveShell InteractiveShell.ast_node_interactivity = "all" # %% participants_inactive_usernames = participants.query_db.get_usernames( collection_start=datetime.date.fromisoformat("2020-08-01") ) df_esm_inactive = get_esm_data(participants_inactive_usernames) # %% df_esm_preprocessed = preprocess_esm(df_esm_inactive) # %% [markdown] # Investigate stressfulness events # %% extracted_ers = df_esm_preprocessed.groupby(["device_id", "esm_session"])['timestamp'].apply(lambda x: math.ceil((x.max() - x.min()) / 1000)).reset_index().rename(columns={'timestamp': 'session_length'}) # questionnaire length extracted_ers = extracted_ers[extracted_ers["session_length"] <= 15 * 60].reset_index(drop=True) # ensure that the longest duration of the questionnaire answering is 15 min session_start_timestamp = df_esm_preprocessed.groupby(['device_id', 'esm_session'])['timestamp'].min().to_frame().rename(columns={'timestamp': 'session_start_timestamp'}) # questionnaire start timestamp session_end_timestamp = df_esm_preprocessed.groupby(['device_id', 'esm_session'])['timestamp'].max().to_frame().rename(columns={'timestamp': 'session_end_timestamp'}) # questionnaire end timestamp se_time = df_esm_preprocessed[df_esm_preprocessed.questionnaire_id == 90.].set_index(['device_id', 'esm_session'])['esm_user_answer'].to_frame().rename(columns={'esm_user_answer': 'se_time'}) se_duration = df_esm_preprocessed[df_esm_preprocessed.questionnaire_id == 91.].set_index(['device_id', 'esm_session'])['esm_user_answer'].to_frame().rename(columns={'esm_user_answer': 'se_duration'}) # Make se_durations to the appropriate lengths # Extracted 3 targets that will be transfered in the csv file to the cleaning script. df_esm_preprocessed[df_esm_preprocessed.questionnaire_id == 87.].columns se_stressfulness_event_tg = df_esm_preprocessed[df_esm_preprocessed.questionnaire_id == 87.].set_index(['device_id', 'esm_session'])['esm_user_answer'].to_frame().rename(columns={'esm_user_answer': 'appraisal_stressfulness_event'}) # All relevant features are joined by inner join to remove standalone columns (e.g., stressfulness event target has larger count) extracted_ers = extracted_ers.join(session_start_timestamp, on=['device_id', 'esm_session'], how='inner') \ .join(session_end_timestamp, on=['device_id', 'esm_session'], how='inner') \ .join(se_stressfulness_event_tg, on=['device_id', 'esm_session'], how='inner') \ .join(se_time, on=['device_id', 'esm_session'], how='left') \ .join(se_duration, on=['device_id', 'esm_session'], how='left') \ # Filter-out the sessions that are not useful. Because of the ambiguity this excludes: # (1) straw event times that are marked as "0 - I don't remember" # (2) straw event durations that are marked as "0 - I don't remember" extracted_ers = extracted_ers[(~extracted_ers.se_time.astype(str).str.startswith("0 - ")) & (~extracted_ers.se_duration.astype(str).str.startswith("0 - ")) & (~extracted_ers.se_duration.astype(str).str.startswith("Removed "))] extracted_ers.reset_index(drop=True, inplace=True) # Add default duration in case if participant answered that no stressful event occured # Prepare data to fit the data structure in the CSV file ... # Add the event time as the start of the questionnaire if no stress event occured extracted_ers['se_time'] = extracted_ers['se_time'].fillna(extracted_ers['session_start_timestamp']) # Type could be an int (timestamp [ms]) which stays the same, and datetime str which is converted to timestamp in miliseconds extracted_ers['event_timestamp'] = extracted_ers['se_time'].apply(lambda x: x if isinstance(x, int) else pd.to_datetime(x).timestamp() * 1000).astype('int64') extracted_ers['shift_direction'] = -1 """>>>>> begin section (could be optimized) <<<<<""" # Checks whether the duration is marked with "1 - It's still ongoing" which means that the end of the current questionnaire # is taken as end time of the segment. Else the user input duration is taken. extracted_ers['temp_duration'] = extracted_ers['se_duration'] extracted_ers['se_duration'] = \ np.where( extracted_ers['se_duration'].astype(str).str.startswith("1 - "), extracted_ers['session_end_timestamp'] - extracted_ers['event_timestamp'], extracted_ers['se_duration'] ) # This converts the rows of timestamps in miliseconds and the rows with datetime... to timestamp in seconds. extracted_ers['se_duration'] = \ extracted_ers['se_duration'].apply(lambda x: math.ceil(x / 1000) if isinstance(x, int) else abs(pd.to_datetime(x).hour * 60 + pd.to_datetime(x).minute) * 60) # Check whether min se_duration is at least the same duration as the ioi. Filter-out the rest. """>>>>> end section <<<<<""" # %% [markdown] # Count negative values of duration print("Count all:", extracted_ers[['se_duration', 'temp_duration', 'session_end_timestamp', 'event_timestamp']].shape[0]) print("Count stressed:", extracted_ers[(~extracted_ers['se_duration'].isna())][['se_duration', 'temp_duration', 'session_end_timestamp', 'event_timestamp']].shape[0]) print("Count negative durations (invalid se_time user input):", extracted_ers[extracted_ers['se_duration'] < 0][['se_duration', 'temp_duration', 'session_end_timestamp', 'event_timestamp']].shape[0]) print("Count 0 durations:", extracted_ers[extracted_ers['se_duration'] == 0][['se_duration', 'temp_duration', 'session_end_timestamp', 'event_timestamp']].shape[0]) extracted_ers[extracted_ers['se_duration'] <= 0][['se_duration', 'temp_duration', 'session_end_timestamp', 'event_timestamp']].shape[0] extracted_ers[(~extracted_ers['se_duration'].isna()) & (extracted_ers['se_duration'] <= 0)][['se_duration', 'temp_duration', 'session_end_timestamp', 'event_timestamp']] ax = extracted_ers.hist(column='se_duration', bins='auto', grid=False, figsize=(12,8), color='#86bf91', zorder=2, rwidth=0.9) hist, bin_edges = np.histogram(extracted_ers['se_duration'].dropna()) hist bin_edges extracted_ers = extracted_ers[extracted_ers['se_duration'] >= 0] # %% # bins = [-100000000, 0, 0.0000001, 1200, 7200, 100000000] #'neg', 'zero', '<20min', '2h', 'high_pos' ..... right=False bins = [-100000000, -0.0000001, 0, 300, 600, 1200, 3600, 7200, 14400, 1000000000] # 'neg', 'zero', '5min', '10min', '20min', '1h', '2h', '4h', 'more' extracted_ers['bins'], edges = pd.cut(extracted_ers.se_duration, bins=bins, labels=['neg', 'zero', '5min', '10min', '20min', '1h', '2h', '4h', 'more'], retbins=True, right=True) #['low', 'medium', 'high'] sns.displot( data=extracted_ers.dropna(), x="bins", binwidth=0.1, ) # %% [markdown] extracted_ers[extracted_ers['session_end_timestamp'] - extracted_ers['event_timestamp'] >= 0] extracted_ers['se_time'].value_counts() pd.set_option('display.max_rows', 100) # Tukaj nas zanima, koliko so oddaljeni časi stresnega dogodka od konca vprašalnika. extracted_ers = extracted_ers[~extracted_ers['se_duration'].isna()] # Remove no stress events extracted_ers['diff_se_time_session_end'] = (extracted_ers['session_end_timestamp'] - extracted_ers['event_timestamp']) print("Count all:", extracted_ers[['se_duration', 'temp_duration', 'session_start_timestamp', 'event_timestamp']].shape[0]) print("Count negative durations:", extracted_ers[extracted_ers['diff_se_time_session_end'] < 0][['se_duration', 'temp_duration', 'session_start_timestamp', 'event_timestamp']]) print("Count 0 durations:", extracted_ers[extracted_ers['diff_se_time_session_end'] == 0][['se_duration', 'temp_duration', 'session_start_timestamp', 'event_timestamp']].shape[0]) extracted_ers[extracted_ers['diff_se_time_session_end'] < 0]['diff_se_time_session_end'] # extracted_ers = extracted_ers[(extracted_ers['diff_se_time_session_end'] > 0)] bins2 = [-100000, 0, 300, 600, 1200, 3600, 7200, 14400, 1000000000] # 'zero', '5min', '10min', '20min', '1h', '2h', '4h', 'more' extracted_ers['bins2'], edges = pd.cut(extracted_ers.diff_se_time_session_end, bins=bins2, labels=['neg_zero', '5min', '10min', '20min', '1h', '2h', '4h', 'more'], retbins=True, right=True) #['low', 'medium', 'high'] extracted_ers['bins2'] sns.displot( data=extracted_ers.dropna(), x="bins2", binwidth=0.1, ) extracted_ers.shape extracted_ers.dropna().shape print() # %% extracted_ers['appraisal_stressfulness_event_num'] = extracted_ers['appraisal_stressfulness_event'].str[0].astype(int) print("duration-target (corr):", extracted_ers['se_duration'].corr(extracted_ers['appraisal_stressfulness_event_num'])) # %% # Explore groupby participants?