Further adapts RAPIDS and add graphical examples.
parent
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commit
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@ -124,7 +124,7 @@ Execution halted
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This can be amended by setting the environment variable manually before attempting to install `tidyverse`:
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This can be amended by setting the environment variable manually before attempting to install `tidyverse`:
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```bash
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```bash
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TZ='Europe/Ljubljana'
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export TZ='Europe/Ljubljana'
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```
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```
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## Possible runtime issues
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## Possible runtime issues
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@ -0,0 +1,205 @@
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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
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<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
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"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
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<!-- Generated by graphviz version 2.43.0 (0)
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-->
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<!-- Title: snakemake_dag Pages: 1 -->
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<svg width="548pt" height="625pt"
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viewBox="0.00 0.00 548.00 625.00" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
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<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 621)">
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<title>snakemake_dag</title>
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<title>0</title>
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<text text-anchor="middle" x="187" y="-15.5" font-family="sans" font-size="10.00">all</text>
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</g>
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<!-- 1 -->
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<g id="node2" class="node">
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<title>1</title>
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<path fill="none" stroke="#56d8a9" stroke-width="2" d="M100,-617C100,-617 12,-617 12,-617 6,-617 0,-611 0,-605 0,-605 0,-588 0,-588 0,-582 6,-576 12,-576 12,-576 100,-576 100,-576 106,-576 112,-582 112,-588 112,-588 112,-605 112,-605 112,-611 106,-617 100,-617"/>
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<text text-anchor="middle" x="56" y="-605" font-family="sans" font-size="10.00">pull_phone_data</text>
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<text text-anchor="middle" x="56" y="-594" font-family="sans" font-size="10.00">pid: nokia_0000003</text>
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<text text-anchor="middle" x="56" y="-583" font-family="sans" font-size="10.00">sensor: calls</text>
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</g>
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<!-- 1->0 -->
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<g id="edge1" class="edge">
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<title>1->0</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M47.83,-575.78C37.21,-548.32 20,-496.76 20,-451 20,-451 20,-451 20,-161 20,-114.96 38.83,-102.85 73,-72 95.21,-51.94 126.33,-38.17 150.45,-29.7"/>
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</g>
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<!-- 2 -->
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<g id="node3" class="node">
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<title>2</title>
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<path fill="none" stroke="#56d863" stroke-width="2" d="M124,-540C124,-540 60,-540 60,-540 54,-540 48,-534 48,-528 48,-528 48,-516 48,-516 48,-510 54,-504 60,-504 60,-504 124,-504 124,-504 130,-504 136,-510 136,-516 136,-516 136,-528 136,-528 136,-534 130,-540 124,-540"/>
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<text text-anchor="middle" x="92" y="-519.5" font-family="sans" font-size="10.00">calls_episodes</text>
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</g>
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<!-- 1->2 -->
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<g id="edge9" class="edge">
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<title>1->2</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M65.84,-575.69C69.87,-567.56 74.6,-558.03 78.92,-549.33"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="82.09,-550.83 83.4,-540.32 75.82,-547.72 82.09,-550.83"/>
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</g>
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<!-- 2->0 -->
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<g id="edge2" class="edge">
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<title>2->0</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M85.12,-503.83C75.18,-477.44 58,-425.14 58,-379 58,-379 58,-379 58,-161 58,-105.34 112.96,-61.84 151.14,-38.34"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="153.16,-41.21 159.96,-33.08 149.58,-35.2 153.16,-41.21"/>
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</g>
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<!-- 3 -->
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<g id="node4" class="node">
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<title>3</title>
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<path fill="none" stroke="#d8a456" stroke-width="2" d="M187.5,-468C187.5,-468 98.5,-468 98.5,-468 92.5,-468 86.5,-462 86.5,-456 86.5,-456 86.5,-444 86.5,-444 86.5,-438 92.5,-432 98.5,-432 98.5,-432 187.5,-432 187.5,-432 193.5,-432 199.5,-438 199.5,-444 199.5,-444 199.5,-456 199.5,-456 199.5,-462 193.5,-468 187.5,-468"/>
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<text text-anchor="middle" x="143" y="-453" font-family="sans" font-size="10.00">resample_episodes</text>
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<text text-anchor="middle" x="143" y="-442" font-family="sans" font-size="10.00">sensor: phone_calls</text>
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</g>
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<!-- 2->3 -->
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<g id="edge10" class="edge">
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<title>2->3</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M104.61,-503.7C110.6,-495.47 117.88,-485.48 124.48,-476.42"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="127.48,-478.25 130.54,-468.1 121.82,-474.13 127.48,-478.25"/>
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</g>
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<!-- 3->0 -->
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<g id="edge3" class="edge">
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<title>3->0</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M140.43,-432C136.64,-405.4 130,-352.3 130,-307 130,-307 130,-307 130,-161 130,-117.8 153,-72.19 169.78,-44.66"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="172.83,-46.37 175.19,-36.04 166.91,-42.65 172.83,-46.37"/>
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</g>
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<!-- 4 -->
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<g id="node5" class="node">
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<title>4</title>
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<path fill="none" stroke="#56d8d8" stroke-width="2" d="M357.5,-396C357.5,-396 194.5,-396 194.5,-396 188.5,-396 182.5,-390 182.5,-384 182.5,-384 182.5,-372 182.5,-372 182.5,-366 188.5,-360 194.5,-360 194.5,-360 357.5,-360 357.5,-360 363.5,-360 369.5,-366 369.5,-372 369.5,-372 369.5,-384 369.5,-384 369.5,-390 363.5,-396 357.5,-396"/>
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<text text-anchor="middle" x="276" y="-375.5" font-family="sans" font-size="10.00">resample_episodes_with_datetime</text>
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</g>
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<!-- 3->4 -->
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<g id="edge11" class="edge">
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<title>3->4</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M175.54,-431.88C193.25,-422.55 215.35,-410.92 234.32,-400.94"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="236.12,-403.94 243.34,-396.19 232.86,-397.75 236.12,-403.94"/>
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</g>
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<!-- 4->0 -->
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<g id="edge4" class="edge">
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<title>4->0</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M250.68,-359.83C218.76,-335.92 168,-289.36 168,-235 168,-235 168,-235 168,-161 168,-120.86 175.55,-74.9 181.13,-46.4"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="184.61,-46.88 183.16,-36.39 177.74,-45.5 184.61,-46.88"/>
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</g>
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<!-- 8 -->
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<g id="node9" class="node">
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<title>8</title>
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<path fill="none" stroke="#68d856" stroke-width="2" d="M353.5,-324C353.5,-324 248.5,-324 248.5,-324 242.5,-324 236.5,-318 236.5,-312 236.5,-312 236.5,-300 236.5,-300 236.5,-294 242.5,-288 248.5,-288 248.5,-288 353.5,-288 353.5,-288 359.5,-288 365.5,-294 365.5,-300 365.5,-300 365.5,-312 365.5,-312 365.5,-318 359.5,-324 353.5,-324"/>
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<text text-anchor="middle" x="301" y="-309" font-family="sans" font-size="10.00">phone_calls_r_features</text>
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<text text-anchor="middle" x="301" y="-298" font-family="sans" font-size="10.00">provider_key: rapids</text>
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</g>
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<!-- 4->8 -->
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<g id="edge15" class="edge">
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<title>4->8</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M282.18,-359.7C285,-351.81 288.39,-342.3 291.52,-333.55"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="294.82,-334.7 294.89,-324.1 288.23,-332.34 294.82,-334.7"/>
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</g>
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<!-- 5 -->
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<g id="node6" class="node">
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<title>5</title>
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<path fill="none" stroke="#afd856" stroke-width="2" d="M475.5,-468C475.5,-468 364.5,-468 364.5,-468 358.5,-468 352.5,-462 352.5,-456 352.5,-456 352.5,-444 352.5,-444 352.5,-438 358.5,-432 364.5,-432 364.5,-432 475.5,-432 475.5,-432 481.5,-432 487.5,-438 487.5,-444 487.5,-444 487.5,-456 487.5,-456 487.5,-462 481.5,-468 475.5,-468"/>
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<text text-anchor="middle" x="420" y="-453" font-family="sans" font-size="10.00">process_time_segments</text>
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<text text-anchor="middle" x="420" y="-442" font-family="sans" font-size="10.00">pid: nokia_0000003</text>
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</g>
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<!-- 5->4 -->
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<g id="edge12" class="edge">
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<title>5->4</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M384.77,-431.88C365.42,-422.47 341.23,-410.71 320.57,-400.67"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="321.89,-397.41 311.36,-396.19 318.83,-403.71 321.89,-397.41"/>
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</g>
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<!-- 5->8 -->
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||||||
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<g id="edge16" class="edge">
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<title>5->8</title>
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||||||
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<path fill="none" stroke="grey" stroke-width="2" d="M415.13,-431.72C409.07,-412.57 397.25,-381.55 379,-360 369.03,-348.23 355.82,-337.94 343.12,-329.64"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="344.79,-326.55 334.45,-324.21 341.08,-332.49 344.79,-326.55"/>
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</g>
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<!-- 6 -->
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<g id="node7" class="node">
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<title>6</title>
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<path fill="none" stroke="#d86656" stroke-width="2" stroke-dasharray="5,2" d="M322.5,-468C322.5,-468 229.5,-468 229.5,-468 223.5,-468 217.5,-462 217.5,-456 217.5,-456 217.5,-444 217.5,-444 217.5,-438 223.5,-432 229.5,-432 229.5,-432 322.5,-432 322.5,-432 328.5,-432 334.5,-438 334.5,-444 334.5,-444 334.5,-456 334.5,-456 334.5,-462 328.5,-468 322.5,-468"/>
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||||||
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<text text-anchor="middle" x="276" y="-447.5" font-family="sans" font-size="10.00">prepare_tzcodes_file</text>
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</g>
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<!-- 6->4 -->
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<g id="edge13" class="edge">
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<title>6->4</title>
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||||||
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<path fill="none" stroke="grey" stroke-width="2" d="M276,-431.7C276,-423.98 276,-414.71 276,-406.11"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="279.5,-406.1 276,-396.1 272.5,-406.1 279.5,-406.1"/>
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</g>
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<!-- 7 -->
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<g id="node8" class="node">
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<title>7</title>
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<path fill="none" stroke="#56d86b" stroke-width="2" stroke-dasharray="5,2" d="M370,-540C370,-540 182,-540 182,-540 176,-540 170,-534 170,-528 170,-528 170,-516 170,-516 170,-510 176,-504 182,-504 182,-504 370,-504 370,-504 376,-504 382,-510 382,-516 382,-516 382,-528 382,-528 382,-534 376,-540 370,-540"/>
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<text text-anchor="middle" x="276" y="-519.5" font-family="sans" font-size="10.00">query_usernames_device_empatica_ids</text>
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</g>
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<!-- 7->6 -->
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<g id="edge14" class="edge">
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<title>7->6</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M276,-503.7C276,-495.98 276,-486.71 276,-478.11"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="279.5,-478.1 276,-468.1 272.5,-478.1 279.5,-478.1"/>
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</g>
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<!-- 8->0 -->
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<g id="edge5" class="edge">
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<title>8->0</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M264.63,-287.8C250.06,-279.08 234.51,-267.11 225,-252 184.07,-186.97 182.71,-92.23 184.91,-46.17"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="188.41,-46.26 185.49,-36.07 181.42,-45.85 188.41,-46.26"/>
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</g>
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<!-- 9 -->
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<g id="node10" class="node">
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<title>9</title>
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<path fill="none" stroke="#d87556" stroke-width="2" d="M382,-252C382,-252 246,-252 246,-252 240,-252 234,-246 234,-240 234,-240 234,-228 234,-228 234,-222 240,-216 246,-216 246,-216 382,-216 382,-216 388,-216 394,-222 394,-228 394,-228 394,-240 394,-240 394,-246 388,-252 382,-252"/>
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<text text-anchor="middle" x="314" y="-237" font-family="sans" font-size="10.00">join_features_from_providers</text>
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<text text-anchor="middle" x="314" y="-226" font-family="sans" font-size="10.00">sensor_key: phone_calls</text>
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</g>
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<!-- 8->9 -->
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<g id="edge17" class="edge">
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<title>8->9</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M304.21,-287.7C305.65,-279.98 307.37,-270.71 308.96,-262.11"/>
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|
<polygon fill="grey" stroke="grey" stroke-width="2" points="312.44,-262.58 310.82,-252.1 305.56,-261.3 312.44,-262.58"/>
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|
</g>
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<!-- 9->0 -->
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<g id="edge6" class="edge">
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<title>9->0</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M294.15,-215.87C283.81,-206.16 271.58,-193.31 263,-180 235.01,-136.57 243.3,-118.11 220,-72 215.36,-62.81 209.61,-53.14 204.23,-44.62"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="207.17,-42.72 198.81,-36.21 201.29,-46.51 207.17,-42.72"/>
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</g>
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<!-- 10 -->
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<g id="node11" class="node">
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<title>10</title>
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<path fill="none" stroke="#56d8d0" stroke-width="2" d="M526,-180C526,-180 284,-180 284,-180 278,-180 272,-174 272,-168 272,-168 272,-156 272,-156 272,-150 278,-144 284,-144 284,-144 526,-144 526,-144 532,-144 538,-150 538,-156 538,-156 538,-168 538,-168 538,-174 532,-180 526,-180"/>
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<text text-anchor="middle" x="405" y="-159.5" font-family="sans" font-size="10.00">merge_sensor_features_for_individual_participants</text>
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</g>
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<!-- 9->10 -->
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<g id="edge18" class="edge">
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<title>9->10</title>
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||||||
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<path fill="none" stroke="grey" stroke-width="2" d="M336.49,-215.7C347.96,-206.88 362.06,-196.03 374.48,-186.47"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="376.97,-188.98 382.76,-180.1 372.7,-183.43 376.97,-188.98"/>
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</g>
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<!-- 10->0 -->
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<g id="edge7" class="edge">
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<title>10->0</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M366.3,-143.85C346.21,-134.31 321.62,-121.63 301,-108 280.21,-94.25 277.55,-87.46 258,-72 245.35,-62 231.16,-51.3 218.81,-42.16"/>
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||||||
|
</g>
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<!-- 11 -->
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<g id="node12" class="node">
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<title>11</title>
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<path fill="none" stroke="#56d892" stroke-width="2" d="M528,-108C528,-108 322,-108 322,-108 316,-108 310,-102 310,-96 310,-96 310,-84 310,-84 310,-78 316,-72 322,-72 322,-72 528,-72 528,-72 534,-72 540,-78 540,-84 540,-84 540,-96 540,-96 540,-102 534,-108 528,-108"/>
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<text text-anchor="middle" x="425" y="-87.5" font-family="sans" font-size="10.00">merge_sensor_features_for_all_participants</text>
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</g>
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<!-- 10->11 -->
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|
<g id="edge19" class="edge">
|
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|
<title>10->11</title>
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||||||
|
<path fill="none" stroke="grey" stroke-width="2" d="M409.94,-143.7C412.17,-135.9 414.85,-126.51 417.33,-117.83"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="420.73,-118.68 420.11,-108.1 414,-116.76 420.73,-118.68"/>
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|
</g>
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<!-- 11->0 -->
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<g id="edge8" class="edge">
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<title>11->0</title>
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||||||
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<path fill="none" stroke="grey" stroke-width="2" d="M367.08,-71.97C322.5,-58.85 262.21,-41.12 223.96,-29.87"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="224.84,-26.48 214.26,-27.02 222.87,-33.2 224.84,-26.48"/>
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|
</g>
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|
</g>
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</svg>
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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
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<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
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"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
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<!-- Generated by graphviz version 2.43.0 (0)
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-->
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<!-- Title: snakemake_dag Pages: 1 -->
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<svg width="414pt" height="396pt"
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viewBox="0.00 0.00 414.00 396.00" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
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<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 392)">
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<title>snakemake_dag</title>
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<polygon fill="white" stroke="transparent" points="-4,4 -4,-392 410,-392 410,4 -4,4"/>
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<!-- 0 -->
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<g id="node1" class="node">
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<title>0</title>
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<text text-anchor="start" x="81" y="-71.6" font-family="sans" font-weight="bold" font-size="18.00">create_participants_files</text>
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<text text-anchor="start" x="81" y="-47.8" font-family="sans" font-size="10.00"> </text>
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<text text-anchor="start" x="85" y="-47.8" font-family="sans" font-weight="bold" font-size="14.00">↪ input</text>
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<text text-anchor="start" x="143" y="-47.8" font-family="sans" font-size="10.00"> </text>
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<text text-anchor="start" x="81" y="-28" font-family="monospace" font-size="10.00">data/external/example_participants.csv</text>
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<text text-anchor="start" x="319" y="-10" font-family="sans" font-size="10.00">  </text>
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<polygon fill="#acd957" stroke="#acd957" points="75,-62 75,-62 333,-62 333,-62 75,-62"/>
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<polygon fill="#acd957" stroke="#acd957" points="75,-22 75,-22 333,-22 333,-22 75,-22"/>
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<polygon fill="none" stroke="#acd957" stroke-width="2" points="74.5,-1 74.5,-91 331.5,-91 331.5,-1 74.5,-1"/>
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</g>
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<!-- 1 -->
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<g id="node2" class="node">
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<title>1</title>
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<text text-anchor="start" x="77" y="-221.6" font-family="sans" font-weight="bold" font-size="18.00">prepare_participants_csv</text>
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<text text-anchor="start" x="77" y="-197.8" font-family="sans" font-size="10.00"> </text>
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|
<text text-anchor="start" x="81" y="-197.8" font-family="sans" font-weight="bold" font-size="14.00">↪ input</text>
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|
<text text-anchor="start" x="139" y="-197.8" font-family="sans" font-size="10.00"> </text>
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|
<text text-anchor="start" x="77" y="-178" font-family="monospace" font-size="10.00">data/external/example_usernames.csv</text>
|
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|
<text text-anchor="start" x="251" y="-157.8" font-family="sans" font-size="10.00"> </text>
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||||||
|
<text text-anchor="start" x="255" y="-157.8" font-family="sans" font-weight="bold" font-size="14.00">output →</text>
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|
<text text-anchor="start" x="325" y="-157.8" font-family="sans" font-size="10.00"> </text>
|
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|
<text text-anchor="start" x="77" y="-138" font-family="monospace" font-size="10.00">data/external/example_participants.csv</text>
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<polygon fill="#57d99e" stroke="#57d99e" points="71,-212 71,-212 336,-212 336,-212 71,-212"/>
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<polygon fill="#57d99e" stroke="#57d99e" points="71,-172 71,-172 336,-172 336,-172 71,-172"/>
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<polygon fill="none" stroke="#57d99e" stroke-width="2" points="71,-129 71,-241 335,-241 335,-129 71,-129"/>
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</g>
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|
<!-- 1->0 -->
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|
<g id="edge1" class="edge">
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|
<title>1->0</title>
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<path fill="none" stroke="grey" stroke-width="2" d="M203,-127.88C203,-119.48 203,-110.81 203,-102.42"/>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="206.5,-102.36 203,-92.36 199.5,-102.36 206.5,-102.36"/>
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</g>
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|
<!-- 2 -->
|
||||||
|
<g id="node3" class="node">
|
||||||
|
<title>2</title>
|
||||||
|
<text text-anchor="start" x="7" y="-367.6" font-family="sans" font-weight="bold" font-size="18.00">query_usernames_device_empatica_ids</text>
|
||||||
|
<text text-anchor="start" x="7" y="-346" font-family="sans" font-size="10.00">  </text>
|
||||||
|
<text text-anchor="start" x="321" y="-325.8" font-family="sans" font-size="10.00"> </text>
|
||||||
|
<text text-anchor="start" x="325" y="-325.8" font-family="sans" font-weight="bold" font-size="14.00">output →</text>
|
||||||
|
<text text-anchor="start" x="395" y="-325.8" font-family="sans" font-size="10.00"> </text>
|
||||||
|
<text text-anchor="start" x="7" y="-306" font-family="monospace" font-size="10.00">data/external/example_usernames.csv</text>
|
||||||
|
<text text-anchor="start" x="7" y="-288" font-family="monospace" font-size="10.00">data/external/timezone.csv</text>
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|
<polygon fill="#86d957" stroke="#86d957" points="1,-358 1,-358 406,-358 406,-358 1,-358"/>
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<polygon fill="#86d957" stroke="#86d957" points="1,-340 1,-340 406,-340 406,-340 1,-340"/>
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|
<polygon fill="none" stroke="#86d957" stroke-width="2" points="1,-279 1,-387 405,-387 405,-279 1,-279"/>
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|
</g>
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|
<!-- 2->1 -->
|
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|
<g id="edge2" class="edge">
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|
<title>2->1</title>
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|
<path fill="none" stroke="grey" stroke-width="2" d="M203,-277.63C203,-269.45 203,-260.93 203,-252.53"/>
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|
<polygon fill="grey" stroke="grey" stroke-width="2" points="206.5,-252.36 203,-242.36 199.5,-252.36 206.5,-252.36"/>
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|
</g>
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|
</g>
|
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|
</svg>
|
After Width: | Height: | Size: 4.6 KiB |
2
rapids
2
rapids
|
@ -1 +1 @@
|
||||||
Subproject commit 712ff748981b735277acd8aef3184cbdcf894fb6
|
Subproject commit 633384c6a9a228ee0a9622903f0c08b560e5e81c
|
Loading…
Reference in New Issue