1953 lines
51 KiB
HTML
1953 lines
51 KiB
HTML
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<!doctype html>
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<html lang="en" class="no-js">
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<head>
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<meta charset="utf-8">
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<meta name="viewport" content="width=device-width,initial-scale=1">
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<link rel="canonical" href="https://www.rapids.science/1.4/">
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<link rel="icon" href="img/logo.png">
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<meta name="generator" content="mkdocs-1.2.1, mkdocs-material-7.1.6+insiders-2.9.1">
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<title>RAPIDS</title>
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<link rel="stylesheet" href="assets/stylesheets/main.92048cb8.min.css">
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<link rel="stylesheet" href="assets/stylesheets/palette.73e53a79.min.css">
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<link rel="preconnect" href="https://fonts.gstatic.com" crossorigin>
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<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:300,400,400i,700%7CRoboto+Mono&display=fallback">
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<style>:root{--md-text-font-family:"Roboto";--md-code-font-family:"Roboto Mono"}</style>
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<link rel="stylesheet" href="stylesheets/extra.css">
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</head>
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<body dir="ltr" data-md-color-scheme="default" data-md-color-primary="blue" data-md-color-accent="blue">
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<script>function __scope(t,e="."){return new URL(e,location).pathname+"."+t}function __get(t,e=localStorage,n){return JSON.parse(e.getItem(__scope(t,n)))}function __set(t,e,n=localStorage,o){try{n.setItem(__scope(t,o),JSON.stringify(e))}catch(t){}}</script>
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<script>var palette=__get("__palette");if(palette&&"object"==typeof palette.color)for(var[key,value]of Object.entries(palette.color))document.body.setAttribute("data-md-color-"+key,value)</script>
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<input class="md-toggle" data-md-toggle="drawer" type="checkbox" id="__drawer" autocomplete="off">
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<input class="md-toggle" data-md-toggle="search" type="checkbox" id="__search" autocomplete="off">
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<label class="md-overlay" for="__drawer"></label>
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<div data-md-component="skip">
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<a href="#welcome-to-rapids-documentation" class="md-skip">
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Skip to content
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</a>
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</div>
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<div data-md-component="announce">
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</div>
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<div data-md-component="outdated" hidden>
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<aside class="md-banner md-banner--warning">
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<div class="md-banner__inner md-grid md-typeset">
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You're not viewing the latest stable version of RAPIDS.
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<a href="https://rapids.science/latest">
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<strong> Click here to go to latest. </strong>
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<script>var el=document.querySelector("[data-md-component=outdated]"),outdated=__get("__outdated",sessionStorage);!0===outdated&&el&&(el.hidden=!1)</script>
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</aside>
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</div>
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<header class="md-header" data-md-component="header">
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<nav class="md-header__inner md-grid" aria-label="Header">
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<a href="." title="RAPIDS" class="md-header__button md-logo" aria-label="RAPIDS" data-md-component="logo">
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<img src="img/logo.png" alt="logo">
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</a>
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<label class="md-header__button md-icon" for="__drawer">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M3 6h18v2H3V6m0 5h18v2H3v-2m0 5h18v2H3v-2z"/></svg>
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</label>
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<div class="md-header__title" data-md-component="header-title">
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<div class="md-header__ellipsis">
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<div class="md-header__topic">
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<span class="md-ellipsis">
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RAPIDS
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</span>
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</div>
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<div class="md-header__topic" data-md-component="header-topic">
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<span class="md-ellipsis">
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Home
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<form class="md-header__option" data-md-component="palette">
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<input class="md-option" data-md-color-media="" data-md-color-scheme="default" data-md-color-primary="blue" data-md-color-accent="blue" type="radio" name="__palette" id="__palette_1">
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<label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M17 7H7a5 5 0 0 0-5 5 5 5 0 0 0 5 5h10a5 5 0 0 0 5-5 5 5 0 0 0-5-5m0 8a3 3 0 0 1-3-3 3 3 0 0 1 3-3 3 3 0 0 1 3 3 3 3 0 0 1-3 3z"/></svg>
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</label>
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<input class="md-option" data-md-color-media="" data-md-color-scheme="slate" data-md-color-primary="blue" data-md-color-accent="blue" type="radio" name="__palette" id="__palette_2">
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<label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M7 10a2 2 0 0 1 2 2 2 2 0 0 1-2 2 2 2 0 0 1-2-2 2 2 0 0 1 2-2m10-3a5 5 0 0 1 5 5 5 5 0 0 1-5 5H7a5 5 0 0 1-5-5 5 5 0 0 1 5-5h10M7 9a3 3 0 0 0-3 3 3 3 0 0 0 3 3h10a3 3 0 0 0 3-3 3 3 0 0 0-3-3H7z"/></svg>
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</label>
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</form>
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<label class="md-header__button md-icon" for="__search">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5z"/></svg>
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</label>
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<div class="md-search" data-md-component="search" role="dialog">
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<label class="md-search__overlay" for="__search"></label>
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<div class="md-search__inner" role="search">
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<form class="md-search__form" name="search">
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<input type="text" class="md-search__input" name="query" aria-label="Search" placeholder="Search" autocapitalize="off" autocorrect="off" autocomplete="off" spellcheck="false" data-md-component="search-query" required>
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<label class="md-search__icon md-icon" for="__search">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5z"/></svg>
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11h12z"/></svg>
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</label>
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<nav class="md-search__options" aria-label="Search">
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<button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41z"/></svg>
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</button>
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</nav>
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<div class="md-search__suggest" data-md-component="search-suggest"></div>
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</form>
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<div class="md-search__output">
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<div class="md-search__scrollwrap" data-md-scrollfix>
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<div class="md-search-result" data-md-component="search-result">
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<div class="md-search-result__meta">
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Initializing search
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</div>
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<ol class="md-search-result__list"></ol>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div class="md-header__source">
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<a href="https://github.com/carissalow/rapids/" title="Go to repository" class="md-source" data-md-component="source">
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<div class="md-source__icon md-icon">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81z"/></svg>
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</div>
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<div class="md-source__repository">
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carissalow/rapids
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</div>
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</a>
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</div>
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</nav>
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</header>
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<div class="md-container" data-md-component="container">
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<main class="md-main" data-md-component="main">
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<div class="md-main__inner md-grid">
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<div class="md-sidebar md-sidebar--primary" data-md-component="sidebar" data-md-type="navigation" >
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<div class="md-sidebar__scrollwrap">
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<div class="md-sidebar__inner">
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<nav class="md-nav md-nav--primary" aria-label="Navigation" data-md-level="0">
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<label class="md-nav__title" for="__drawer">
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<a href="." title="RAPIDS" class="md-nav__button md-logo" aria-label="RAPIDS" data-md-component="logo">
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<img src="img/logo.png" alt="logo">
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</a>
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RAPIDS
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</label>
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<div class="md-nav__source">
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<a href="https://github.com/carissalow/rapids/" title="Go to repository" class="md-source" data-md-component="source">
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<div class="md-source__icon md-icon">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81z"/></svg>
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</div>
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<div class="md-source__repository">
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carissalow/rapids
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</div>
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</a>
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</div>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item md-nav__item--active">
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<input class="md-nav__toggle md-toggle" data-md-toggle="toc" type="checkbox" id="__toc">
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<label class="md-nav__link md-nav__link--active" for="__toc">
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Home
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<span class="md-nav__icon md-icon"></span>
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</label>
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<a href="." class="md-nav__link md-nav__link--active">
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Home
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</a>
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<nav class="md-nav md-nav--secondary" aria-label="Table of contents">
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<label class="md-nav__title" for="__toc">
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<span class="md-nav__icon md-icon"></span>
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Table of contents
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</label>
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<ul class="md-nav__list" data-md-component="toc" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="#what-are-the-benefits-of-using-rapids" class="md-nav__link">
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What are the benefits of using RAPIDS?
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</a>
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</li>
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<li class="md-nav__item">
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<a href="#users-and-contributors" class="md-nav__link">
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Users and Contributors
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</a>
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</li>
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</ul>
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</nav>
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</li>
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<li class="md-nav__item">
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<a href="setup/overview/" class="md-nav__link">
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Overview
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</a>
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</li>
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<li class="md-nav__item">
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<a href="workflow-examples/minimal/" class="md-nav__link">
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Minimal Example
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</a>
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</li>
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<li class="md-nav__item">
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<a href="citation/" class="md-nav__link">
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Citation
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</a>
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</li>
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<li class="md-nav__item">
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<a href="contributing/" class="md-nav__link">
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Contributing
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</a>
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</li>
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_6" type="checkbox" id="__nav_6" >
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<label class="md-nav__link" for="__nav_6">
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Setup
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Setup" data-md-level="1">
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<label class="md-nav__title" for="__nav_6">
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<span class="md-nav__icon md-icon"></span>
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Setup
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="setup/installation/" class="md-nav__link">
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Installation
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</a>
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</li>
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<li class="md-nav__item">
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<a href="setup/configuration/" class="md-nav__link">
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Configuration
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</a>
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</li>
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<li class="md-nav__item">
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<a href="setup/execution/" class="md-nav__link">
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Execution
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</a>
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</li>
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</ul>
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_7" type="checkbox" id="__nav_7" >
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<label class="md-nav__link" for="__nav_7">
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Data Streams
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Data Streams" data-md-level="1">
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<label class="md-nav__title" for="__nav_7">
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<span class="md-nav__icon md-icon"></span>
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Data Streams
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="datastreams/data-streams-introduction/" class="md-nav__link">
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Introduction
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</a>
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</li>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_7_2" type="checkbox" id="__nav_7_2" >
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<label class="md-nav__link" for="__nav_7_2">
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Phone
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Phone" data-md-level="2">
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<label class="md-nav__title" for="__nav_7_2">
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<span class="md-nav__icon md-icon"></span>
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Phone
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="datastreams/aware-mysql/" class="md-nav__link">
|
|
aware_mysql
|
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</a>
|
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</li>
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|
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<li class="md-nav__item">
|
|
<a href="datastreams/aware-csv/" class="md-nav__link">
|
|
aware_csv
|
|
</a>
|
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</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="datastreams/aware-influxdb/" class="md-nav__link">
|
|
aware_influxdb (beta)
|
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</a>
|
|
</li>
|
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<li class="md-nav__item">
|
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<a href="datastreams/mandatory-phone-format/" class="md-nav__link">
|
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Mandatory Phone Format
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</a>
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</li>
|
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</ul>
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_7_3" type="checkbox" id="__nav_7_3" >
|
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|
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<label class="md-nav__link" for="__nav_7_3">
|
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Fitbit
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|
<span class="md-nav__icon md-icon"></span>
|
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</label>
|
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|
|
<nav class="md-nav" aria-label="Fitbit" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_7_3">
|
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<span class="md-nav__icon md-icon"></span>
|
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Fitbit
|
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</label>
|
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<ul class="md-nav__list" data-md-scrollfix>
|
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<li class="md-nav__item">
|
|
<a href="datastreams/fitbitjson-mysql/" class="md-nav__link">
|
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fitbitjson_mysql
|
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</a>
|
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</li>
|
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<li class="md-nav__item">
|
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<a href="datastreams/fitbitjson-csv/" class="md-nav__link">
|
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fitbitjson_csv
|
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</a>
|
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</li>
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<li class="md-nav__item">
|
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<a href="datastreams/fitbitparsed-mysql/" class="md-nav__link">
|
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fitbitparsed_mysql
|
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</a>
|
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</li>
|
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|
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<li class="md-nav__item">
|
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<a href="datastreams/fitbitparsed-csv/" class="md-nav__link">
|
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fitbitparsed_csv
|
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</a>
|
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</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="datastreams/mandatory-fitbit-format/" class="md-nav__link">
|
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Mandatory Fitbit Format
|
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</a>
|
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</li>
|
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|
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</ul>
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_7_4" type="checkbox" id="__nav_7_4" >
|
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|
|
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|
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|
|
<label class="md-nav__link" for="__nav_7_4">
|
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Empatica
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Empatica" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_7_4">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Empatica
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="datastreams/empatica-zip/" class="md-nav__link">
|
|
empatica_zip
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="datastreams/mandatory-empatica-format/" class="md-nav__link">
|
|
Mandatory Empatica Format
|
|
</a>
|
|
</li>
|
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|
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</ul>
|
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</nav>
|
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</li>
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<li class="md-nav__item">
|
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<a href="datastreams/add-new-data-streams/" class="md-nav__link">
|
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Add New Data Streams
|
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</a>
|
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</li>
|
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|
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</ul>
|
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</nav>
|
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</li>
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|
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
|
|
|
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|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_8" type="checkbox" id="__nav_8" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_8">
|
|
Behavioral Features
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Behavioral Features" data-md-level="1">
|
|
<label class="md-nav__title" for="__nav_8">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Behavioral Features
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
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|
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="features/feature-introduction/" class="md-nav__link">
|
|
Introduction
|
|
</a>
|
|
</li>
|
|
|
|
|
|
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|
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<li class="md-nav__item md-nav__item--nested">
|
|
|
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|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_8_2" type="checkbox" id="__nav_8_2" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_8_2">
|
|
Phone
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Phone" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_8_2">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Phone
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-accelerometer/" class="md-nav__link">
|
|
Phone Accelerometer
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-activity-recognition/" class="md-nav__link">
|
|
Phone Activity Recognition
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-applications-crashes/" class="md-nav__link">
|
|
Phone Applications Crashes
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-applications-foreground/" class="md-nav__link">
|
|
Phone Applications Foreground
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-applications-notifications/" class="md-nav__link">
|
|
Phone Applications Notifications
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-battery/" class="md-nav__link">
|
|
Phone Battery
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="features/phone-bluetooth/" class="md-nav__link">
|
|
Phone Bluetooth
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="features/phone-calls/" class="md-nav__link">
|
|
Phone Calls
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="features/phone-conversation/" class="md-nav__link">
|
|
Phone Conversation
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="features/phone-data-yield/" class="md-nav__link">
|
|
Phone Data Yield
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-keyboard/" class="md-nav__link">
|
|
Phone Keyboard
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="features/phone-light/" class="md-nav__link">
|
|
Phone Light
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-locations/" class="md-nav__link">
|
|
Phone Locations
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-log/" class="md-nav__link">
|
|
Phone Log
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-messages/" class="md-nav__link">
|
|
Phone Messages
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-screen/" class="md-nav__link">
|
|
Phone Screen
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-wifi-connected/" class="md-nav__link">
|
|
Phone WiFI Connected
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/phone-wifi-visible/" class="md-nav__link">
|
|
Phone WiFI Visible
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_8_3" type="checkbox" id="__nav_8_3" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_8_3">
|
|
Fitbit
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Fitbit" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_8_3">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Fitbit
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/fitbit-calories-intraday/" class="md-nav__link">
|
|
Fitbit Calories Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/fitbit-data-yield/" class="md-nav__link">
|
|
Fitbit Data Yield
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/fitbit-heartrate-summary/" class="md-nav__link">
|
|
Fitbit Heart Rate Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/fitbit-heartrate-intraday/" class="md-nav__link">
|
|
Fitbit Heart Rate Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/fitbit-sleep-summary/" class="md-nav__link">
|
|
Fitbit Sleep Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/fitbit-sleep-intraday/" class="md-nav__link">
|
|
Fitbit Sleep Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/fitbit-steps-summary/" class="md-nav__link">
|
|
Fitbit Steps Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/fitbit-steps-intraday/" class="md-nav__link">
|
|
Fitbit Steps Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_8_4" type="checkbox" id="__nav_8_4" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_8_4">
|
|
Empatica
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Empatica" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_8_4">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Empatica
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/empatica-accelerometer/" class="md-nav__link">
|
|
Empatica Accelerometer
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/empatica-heartrate/" class="md-nav__link">
|
|
Empatica Heart Rate
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="features/empatica-temperature/" class="md-nav__link">
|
|
Empatica Temperature
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
<li class="md-nav__item">
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What are the benefits of using RAPIDS?
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20.71 7.04c.39-.39.39-1.04 0-1.41l-2.34-2.34c-.37-.39-1.02-.39-1.41 0l-1.84 1.83 3.75 3.75M3 17.25V21h3.75L17.81 9.93l-3.75-3.75L3 17.25z"/></svg>
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<h1 id="welcome-to-rapids-documentation">Welcome to RAPIDS documentation<a class="headerlink" href="#welcome-to-rapids-documentation" title="Permanent link">¶</a></h1>
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<p>Reproducible Analysis Pipeline for Data Streams (RAPIDS) allows you to process smartphone and wearable data to <a href="features/feature-introduction/">extract</a> and <a href="features/add-new-features/">create</a> <strong>behavioral features</strong> (a.k.a. digital biomarkers), <a href="visualizations/data-quality-visualizations/">visualize</a> mobile sensor data, and <a href="workflow-examples/analysis/">structure</a> your analysis into reproducible workflows.</p>
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<p>RAPIDS is open source, documented, multi-platform, modular, tested, and reproducible. At the moment, we support <a href="datastreams/data-streams-introduction">data streams</a> logged by smartphones, Fitbit wearables, and Empatica wearables (the latter in collaboration with the <a href="https://dbdp.org/">DBDP</a>). </p>
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<div class="admonition tip">
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<p class="admonition-title">Where do I start?</p>
|
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<p><span class="twemoji"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M13 3h-2v10h2V3m4.83 2.17-1.42 1.42A6.944 6.944 0 0 1 19 12a7 7 0 0 1-7 7A6.995 6.995 0 0 1 7.58 6.58L6.17 5.17a9.001 9.001 0 0 0-1.03 12.69c3.22 3.78 8.9 4.24 12.69 1.02A9.003 9.003 0 0 0 21 12c0-2.63-1.16-5.13-3.17-6.83z"/></svg></span> New to RAPIDS? Check our <a href="setup/overview/">Overview + FAQ</a> and <a href="workflow-examples/minimal">minimal example</a></p>
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<p><span class="twemoji"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M13 2.05v2c4.39.54 7.5 4.53 6.96 8.92-.46 3.64-3.32 6.53-6.96 6.96v2c5.5-.55 9.5-5.43 8.95-10.93-.45-4.75-4.22-8.5-8.95-8.97v.02M5.67 19.74A9.994 9.994 0 0 0 11 22v-2a8.002 8.002 0 0 1-3.9-1.63l-1.43 1.37m1.43-14c1.12-.9 2.47-1.48 3.9-1.68v-2c-1.95.19-3.81.94-5.33 2.2L7.1 5.74M5.69 7.1 4.26 5.67A9.885 9.885 0 0 0 2.05 11h2c.19-1.42.75-2.77 1.64-3.9M4.06 13h-2c.2 1.96.97 3.81 2.21 5.33l1.42-1.43A8.002 8.002 0 0 1 4.06 13M10 16.5l6-4.5-6-4.5v9z"/></svg></span> <a href="setup/installation">Install</a>, <a href="setup/configuration">configure</a>, and <a href="setup/execution">execute</a> RAPIDS to <a href="features/feature-introduction/">extract</a> and <a href="visualizations/data-quality-visualizations/">plot</a> behavioral features</p>
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<p><span class="twemoji"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 2A10 10 0 0 0 2 12c0 4.42 2.87 8.17 6.84 9.5.5.08.66-.23.66-.5v-1.69c-2.77.6-3.36-1.34-3.36-1.34-.46-1.16-1.11-1.47-1.11-1.47-.91-.62.07-.6.07-.6 1 .07 1.53 1.03 1.53 1.03.87 1.52 2.34 1.07 2.91.83.09-.65.35-1.09.63-1.34-2.22-.25-4.55-1.11-4.55-4.92 0-1.11.38-2 1.03-2.71-.1-.25-.45-1.29.1-2.64 0 0 .84-.27 2.75 1.02.79-.22 1.65-.33 2.5-.33.85 0 1.71.11 2.5.33 1.91-1.29 2.75-1.02 2.75-1.02.55 1.35.2 2.39.1 2.64.65.71 1.03 1.6 1.03 2.71 0 3.82-2.34 4.66-4.57 4.91.36.31.69.92.69 1.85V21c0 .27.16.59.67.5C19.14 20.16 22 16.42 22 12A10 10 0 0 0 12 2z"/></svg></span> Bugs should be reported on <a href="https://github.com/carissalow/rapids/issues">Github issues</a></p>
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<p><span class="twemoji"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path d="M139.61 35.5a12 12 0 0 0-17 0L58.93 98.81l-22.7-22.12a12 12 0 0 0-17 0L3.53 92.41a12 12 0 0 0 0 17l47.59 47.4a12.78 12.78 0 0 0 17.61 0l15.59-15.62L156.52 69a12.09 12.09 0 0 0 .09-17zm0 159.19a12 12 0 0 0-17 0l-63.68 63.72-22.7-22.1a12 12 0 0 0-17 0L3.53 252a12 12 0 0 0 0 17L51 316.5a12.77 12.77 0 0 0 17.6 0l15.7-15.69 72.2-72.22a12 12 0 0 0 .09-16.9zM64 368c-26.49 0-48.59 21.5-48.59 48S37.53 464 64 464a48 48 0 0 0 0-96zm432 16H208a16 16 0 0 0-16 16v32a16 16 0 0 0 16 16h288a16 16 0 0 0 16-16v-32a16 16 0 0 0-16-16zm0-320H208a16 16 0 0 0-16 16v32a16 16 0 0 0 16 16h288a16 16 0 0 0 16-16V80a16 16 0 0 0-16-16zm0 160H208a16 16 0 0 0-16 16v32a16 16 0 0 0 16 16h288a16 16 0 0 0 16-16v-32a16 16 0 0 0-16-16z"/></svg></span> Questions, discussions, feature requests, and feedback can be posted on our <a href="https://github.com/carissalow/rapids/discussions">Github discussions</a></p>
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<p><span class="twemoji"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M22.46 6c-.77.35-1.6.58-2.46.69.88-.53 1.56-1.37 1.88-2.38-.83.5-1.75.85-2.72 1.05C18.37 4.5 17.26 4 16 4c-2.35 0-4.27 1.92-4.27 4.29 0 .34.04.67.11.98C8.28 9.09 5.11 7.38 3 4.79c-.37.63-.58 1.37-.58 2.15 0 1.49.75 2.81 1.91 3.56-.71 0-1.37-.2-1.95-.5v.03c0 2.08 1.48 3.82 3.44 4.21a4.22 4.22 0 0 1-1.93.07 4.28 4.28 0 0 0 4 2.98 8.521 8.521 0 0 1-5.33 1.84c-.34 0-.68-.02-1.02-.06C3.44 20.29 5.7 21 8.12 21 16 21 20.33 14.46 20.33 8.79c0-.19 0-.37-.01-.56.84-.6 1.56-1.36 2.14-2.23z"/></svg></span> Keep up to date with our <a href="https://twitter.com/RAPIDS_Science">Twitter feed</a> or <a href="http://awareframework.com:3000/">Slack channel</a></p>
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<p><span class="twemoji"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M16 11V9h-3V6h-2v3H8v2h3v3h2v-3h3m1-8a2 2 0 0 1 2 2v10a2 2 0 0 1-2 2h-4v2h1a1 1 0 0 1 1 1h7v2h-7a1 1 0 0 1-1 1h-4a1 1 0 0 1-1-1H2v-2h7a1 1 0 0 1 1-1h1v-2H7a2 2 0 0 1-2-2V5a2 2 0 0 1 2-2h10z"/></svg></span> Do you want to modify or add new functionality to RAPIDS? Check our <a href="./contributing">contributing guide</a></p>
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<p><span class="twemoji"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path d="M370.72 133.28C339.458 104.008 298.888 87.962 255.848 88c-77.458.068-144.328 53.178-162.791 126.85-1.344 5.363-6.122 9.15-11.651 9.15H24.103c-7.498 0-13.194-6.807-11.807-14.176C33.933 94.924 134.813 8 256 8c66.448 0 126.791 26.136 171.315 68.685L463.03 40.97C478.149 25.851 504 36.559 504 57.941V192c0 13.255-10.745 24-24 24H345.941c-21.382 0-32.09-25.851-16.971-40.971l41.75-41.749zM32 296h134.059c21.382 0 32.09 25.851 16.971 40.971l-41.75 41.75c31.262 29.273 71.835 45.319 114.876 45.28 77.418-.07 144.315-53.144 162.787-126.849 1.344-5.363 6.122-9.15 11.651-9.15h57.304c7.498 0 13.194 6.807 11.807 14.176C478.067 417.076 377.187 504 256 504c-66.448 0-126.791-26.136-171.315-68.685L48.97 471.03C33.851 486.149 8 475.441 8 454.059V320c0-13.255 10.745-24 24-24z"/></svg></span> Are you upgrading from RAPIDS <code>0.4.x</code> or older? Follow this <a href="migrating-from-old-versions">guide</a></p>
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</div>
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<h2 id="what-are-the-benefits-of-using-rapids">What are the benefits of using RAPIDS?<a class="headerlink" href="#what-are-the-benefits-of-using-rapids" title="Permanent link">¶</a></h2>
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<ol>
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<li><strong>Consistent analysis</strong>. Every participant sensor dataset is analyzed in the same way and isolated from each other.</li>
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<li><strong>Efficient analysis</strong>. Every analysis step is executed only once. Whenever your data or configuration changes, only the affected files are updated.</li>
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<li><strong>Parallel execution</strong>. Thanks to <a href="https://snakemake.github.io/">Snakemake</a>, your analysis can be executed over multiple cores without changing your code.</li>
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<li><strong>Code-free features</strong>. Extract any of the behavioral features offered by RAPIDS without writing any code.</li>
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<li><strong>Extensible code</strong>. You can easily add your own data streams or behavioral features in R or Python, share them with the community, and keep authorship and citations.</li>
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<li><strong>Time zone aware</strong>. Your data is adjusted to one or more time zones per participant.</li>
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<li><strong>Flexible time segments</strong>. You can extract behavioral features on time windows of any length (e.g., 5 minutes, 3 hours, 2 days), on every day or particular days (e.g., weekends, Mondays, the 1<sup>st</sup> of each month, etc.), or around events of interest (e.g., surveys or clinical relapses).</li>
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<li><strong>Tested code</strong>. We are continually adding tests to make sure our behavioral features are correct.</li>
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<li><strong>Reproducible code</strong>. If you structure your analysis within RAPIDS, you can be sure your code will run in other computers as intended, thanks to R and Python virtual environments. You can share your analysis code along with your publications without any overhead.</li>
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<li><strong>Private</strong>. All your data is processed locally.</li>
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</ol>
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<h2 id="users-and-contributors">Users and Contributors<a class="headerlink" href="#users-and-contributors" title="Permanent link">¶</a></h2>
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<details class="quote"><summary>Community Contributors</summary><p>Many thanks to the <a href="./team">whole team</a> and our community contributions:</p>
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<ul>
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<li>Agam Kumar (CMU)</li>
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<li>Yasaman S. Sefidgar (University of Washington)</li>
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<li>Joe Kim (Duke University)</li>
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<li>Brinnae Bent (Duke University)</li>
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<li>Stephen Price (CMU)</li>
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<li>Neil Singh (University of Virginia)</li>
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</ul>
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<p>Many thanks to the researchers that made <a href="./citation">their work</a> open source:</p>
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<ul>
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<li>Panda et al. <a href="https://pubmed.ncbi.nlm.nih.gov/31657854/">paper</a></li>
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<li>Stachl et al. <a href="https://www.pnas.org/content/117/30/17680">paper</a></li>
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<li>Doryab et al. <a href="https://arxiv.org/abs/1812.10394">paper</a></li>
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<li>Barnett et al. <a href="https://doi.org/10.1093/biostatistics/kxy059">paper</a></li>
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<li>Canzian et al. <a href="https://doi.org/10.1145/2750858.2805845">paper</a></li>
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</ul>
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</details>
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<details class="quote"><summary>Publications using RAPIDS</summary><ul>
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<li>Predicting Symptoms of Depression and Anxiety Using Smartphone and Wearable Data <a href="https://www.frontiersin.org/articles/10.3389/fpsyt.2021.625247/full">link</a></li>
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<li>Predicting Depression from Smartphone Behavioral Markers Using Machine Learning Methods, Hyper-parameter Optimization, and Feature Importance Analysis: An Exploratory Study <a href="https://preprints.jmir.org/preprint/26540">link</a></li>
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<li>Digital Biomarkers of Symptom Burden Self-Reported by Perioperative Patients Undergoing Pancreatic Surgery: Prospective Longitudinal Study <a href="https://cancer.jmir.org/2021/2/e27975/">link</a></li>
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<li>An Automated Machine Learning Pipeline for Monitoring and Forecasting Mobile Health Data <a href="https://edas.info/showManuscript.php?m=1570708269&random=750318666&type=final&ext=pdf&title=PDF+file">link</a></li>
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<li>Mobile Footprinting: Linking Individual Distinctiveness in Mobility Patterns to Mood, Sleep, and Brain Functional Connectivity <a href="https://www.biorxiv.org/content/10.1101/2021.05.17.444568v1.abstract">link</a></li>
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</ul>
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</details>
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<div class="users">
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<div><img alt="carnegie mellon university" loading="lazy" src="./img/logos/cmu.png" /></div>
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<div><img alt="digital biomarker development pipeline" loading="lazy" src="./img/logos/dbdp.png" /></div>
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<div><img alt="university of helsinki" loading="lazy" src="./img/logos/helsinki.jpg" /></div>
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<div><img alt="university of manchester" loading="lazy" src="./img/logos/manchester.png" /></div>
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<div><img alt="monash university" loading="lazy" src="./img/logos/monash.jpg" /></div>
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<div><img alt="oulu university" loading="lazy" src="./img/logos/oulu.png" /></div>
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<div><img alt="university of pennsylvania" loading="lazy" src="./img/logos/penn.png" /></div>
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<div><img alt="university of pittsburgh" loading="lazy" src="./img/logos/pitt.png" /></div>
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<div><img alt="university of virginia" loading="lazy" src="./img/logos/virginia.jpg" /></div>
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<div><img alt="university of washington" loading="lazy" src="./img/logos/uw.jpg" /></div>
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