53 lines
2.1 KiB
Docker
53 lines
2.1 KiB
Docker
# getting base image ubuntu
|
|
FROM ubuntu:20.04
|
|
ENV DEBIAN_FRONTEND=noninteractive
|
|
RUN apt update && apt install -y \
|
|
libcurl4-openssl-dev \
|
|
libssl-dev \
|
|
libxml2-dev \
|
|
libmysqlclient-dev \
|
|
mysql-server
|
|
RUN apt-get update && apt-get install -y gnupg
|
|
RUN apt-get update && apt-get install -y software-properties-common
|
|
RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
|
|
RUN add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/'
|
|
RUN apt update && apt install -y r-base
|
|
RUN apt install -y pandoc
|
|
RUN apt install -y git
|
|
RUN apt-get update && apt-get install -y vim
|
|
RUN apt update && apt install -y unzip
|
|
ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
|
|
ENV PATH /opt/conda/bin:$PATH
|
|
|
|
RUN apt-get update --fix-missing && \
|
|
apt-get install -y wget bzip2 ca-certificates curl git && \
|
|
apt-get clean && \
|
|
rm -rf /var/lib/apt/lists/*
|
|
|
|
RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.5.11-Linux-x86_64.sh -O ~/miniconda.sh && \
|
|
/bin/bash ~/miniconda.sh -b -p /opt/conda && \
|
|
rm ~/miniconda.sh && \
|
|
/opt/conda/bin/conda clean -tipsy && \
|
|
ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
|
|
echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
|
|
echo "conda activate base" >> ~/.bashrc
|
|
|
|
ENV TINI_VERSION v0.16.1
|
|
ADD https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini /usr/bin/tini
|
|
RUN chmod +x /usr/bin/tini
|
|
RUN git clone https://github.com/carissalow/rapids
|
|
ENTRYPOINT [ "/usr/bin/tini", "--" ]
|
|
CMD [ "/bin/bash" ]
|
|
RUN conda update -n base -c defaults conda
|
|
WORKDIR /rapids
|
|
RUN conda env create -f environment.yml -n rapids
|
|
RUN Rscript --vanilla -e 'install.packages("rmarkdown", repos="http://cran.us.r-project.org")'
|
|
RUN R -e 'renv::restore()'
|
|
ADD https://osf.io/587wc/download data/external
|
|
RUN mv data/external/download data/external/rapids_example.sql.zip
|
|
RUN unzip data/external/rapids_example.sql.zip
|
|
RUN cp rapids_example.sql data/external/rapids_example.sql
|
|
RUN rm data/external/rapids_example.sql.zip
|
|
RUN rm rapids_example.sql
|
|
RUN echo "source activate rapids" > ~/.bashrc
|
|
ENV PATH /opt/conda/envs/rapids/bin:$PATH |