75 lines
3.3 KiB
YAML
75 lines
3.3 KiB
YAML
services:
|
|
- mysql
|
|
- docker
|
|
sudo: required
|
|
language: python
|
|
jobs:
|
|
include:
|
|
- stage: Tests
|
|
name: Python 3.7 on Xenial Linux
|
|
os: linux
|
|
language: python
|
|
python: 3.7
|
|
before_install:
|
|
- /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install.sh)"
|
|
- export PATH=/home/linuxbrew/.linuxbrew/bin:$PATH
|
|
- source ~/.bashrc
|
|
- sudo apt-get install linuxbrew-wrapper
|
|
- brew tap --shallow linuxbrew/xorg
|
|
- brew install r
|
|
- R --version
|
|
- wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O
|
|
miniconda.sh;
|
|
- bash miniconda.sh -b -p $HOME/miniconda
|
|
- source "$HOME/miniconda/etc/profile.d/conda.sh"
|
|
- hash -r
|
|
- conda config --set always_yes yes --set changeps1 no
|
|
install:
|
|
- conda init bash
|
|
- conda update -q --all --yes conda
|
|
- conda env create -q -n test-environment python=$TRAVIS_PYTHON_VERSION --file
|
|
environment.yml
|
|
- conda activate test-environment
|
|
- snakemake -j1 renv_install
|
|
- R -e 'renv::settings$use.cache(FALSE)'
|
|
- snakemake -j1 renv_restore
|
|
cache:
|
|
directories:
|
|
- "/home/travis/.linuxbrew"
|
|
- "$HOME/.local/share/renv"
|
|
- "$TRAVIS_BUILD_DIR/renv/library"
|
|
script:
|
|
- bash tests/scripts/run_tests.sh all test
|
|
- stage: deploy
|
|
name: Python 3.7 on Xenial Linux Docker
|
|
os: linux
|
|
language: python
|
|
script:
|
|
- docker build -t rapids .
|
|
- docker login -u "agamk" -p $DOCKERPWD
|
|
- docker tag rapids agamk/rapids:travislatest
|
|
- docker push agamk/rapids:travislatest
|
|
branches:
|
|
only:
|
|
- master
|
|
- time_segment
|
|
|
|
stages:
|
|
- name: deploy
|
|
if: branch = master AND \
|
|
type = push
|
|
|
|
notifications:
|
|
email: false
|
|
slack:
|
|
secure: 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
|
|
on_success: always
|
|
template:
|
|
- Repo `%{repository_slug}` *%{result}* build (<%{build_url}|#%{build_number}>)
|
|
for commit (<%{compare_url}|%{commit}>) on branch `%{branch}`.
|
|
- 'Execution time: *%{duration}*'
|
|
- 'Message: %{message}'
|
|
env:
|
|
global:
|
|
secure: 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
|