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<h1 id="minimal-working-example">Minimal Working Example<a class="headerlink" href="#minimal-working-example" title="Permanent link">&para;</a></h1>
<p>This is a quick guide for creating and running a simple pipeline to extract missing, outgoing, and incoming <code>call</code> features for <code>daily</code> (<code>00:00:00</code> to <code>23:59:59</code>) and <code>night</code> (<code>00:00:00</code> to <code>05:59:59</code>) epochs of every day of data of one participant monitored on the US East coast with an Android smartphone.</p>
<div class="admonition hint">
<p class="admonition-title">Hint</p>
<p>If you don&rsquo;t have <code>call</code> data that you can use to try this example you can restore this <a href="../../img/calls.csv">CSV file</a> as a table in a MySQL database.</p>
</div>
<ol>
<li>Install RAPIDS and make sure your <code>conda</code> environment is active (see <a href="../../setup/installation">Installation</a>)</li>
<li>
<p>Make the changes listed below for the corresponding <a href="../../setup/configuration">Configuration</a> step (we provide an example of what the relevant sections in your <code>config.yml</code> will look like after you are done)</p>
<details class="info"><summary>Required configuration changes</summary><ol>
<li>
<p><strong>Add your <a href="../../setup/configuration#database-credentials">database credentials</a>.</strong> </p>
<p>Setup your database connection credentials in <code>.env</code>, we assume your credentials group in the <code>.env</code> file is called <code>MY_GROUP</code>.</p>
</li>
<li>
<p><strong>Choose the <a href="../../setup/configuration#timezone-of-your-study">timezone of your study</a>.</strong> </p>
<p>Since this example is processing data collected on the US East cost, <code>America/New_York</code> should be the configured timezone, change this according to your data.</p>
</li>
<li>
<p><strong>Create your <a href="../../setup/configuration#participant-files">participants files</a>.</strong></p>
<p>Since we are processing data from a single participant, you only need to create a single participant file called <code>p01.yaml</code>. This participant file only has a <code>PHONE</code> section because this hypothetical participant was only monitored with an smartphone. You also need to add <code>p01</code> to <code>[PIDS]</code> in <code>config.yaml</code>. The following would be the content of your <code>p01.yaml</code> participant file:
<div class="highlight"><pre><span></span><code><span class="nt">PHONE</span><span class="p">:</span>
<span class="nt">DEVICE_IDS</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="nv">a748ee1a-1d0b-4ae9-9074-279a2b6ba524</span><span class="p p-Indicator">]</span> <span class="c1"># the participant&#39;s AWARE device id</span>
<span class="nt">PLATFORMS</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="nv">android</span><span class="p p-Indicator">]</span> <span class="c1"># or ios</span>
<span class="nt">LABEL</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">MyTestP01</span> <span class="c1"># any string</span>
<span class="nt">START_DATE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">2020-01-01</span> <span class="c1"># this can also be empty</span>
<span class="nt">END_DATE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">2021-01-01</span> <span class="c1"># this can also be empty</span>
</code></pre></div></p>
</li>
<li>
<p><strong>Select what <a href="../../setup/configuration#time-segments">time segments</a> you want to extract features on.</strong> </p>
<p><code>[TIME_SEGMENTS][TYPE]</code> should be the default <code>PERIODIC</code>. Change <code>[TIME_SEGMENTS][FILE]</code> with the path (for example <code>data/external/timesegments_periodic.csv</code>) of a file containing the following lines:
<div class="highlight"><pre><span></span><code>label,start_time,length,repeats_on,repeats_value
daily,00:00:00,23H 59M 59S,every_day,0
night,00:00:00,5H 59M 59S,every_day,0
</code></pre></div></p>
</li>
<li>
<p><strong>Modify your <a href="../../setup/configuration#device-data-source-configuration">device data source configuration</a></strong></p>
<p>In this example we do not need to modify this section because we are using smartphone data collected with AWARE stored on a MySQL database.</p>
</li>
<li>
<p><strong>Select what <a href="../../setup/configuration#sensor-and-features-to-process">sensors and features</a> you want to process.</strong> </p>
<p>Set <code>[PHONE_CALLS][PROVIDERS][RAPIDS][COMPUTE]</code> to <code>True</code> in the <code>config.yaml</code> file.</p>
</li>
</ol>
</details>
<details class="example"><summary>Example of the <code>config.yaml</code> sections after the changes outlined above</summary><p>Highlighted lines are related to the configuration steps above.
<div class="highlight"><pre><span></span><code><span class="hll"><span class="nt">PIDS</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="nv">p01</span><span class="p p-Indicator">]</span>
</span>
<span class="nt">TIMEZONE</span><span class="p">:</span> <span class="nl">&amp;timezone</span>
<span class="hll"><span class="l l-Scalar l-Scalar-Plain">America/New_York</span>
</span>
<span class="nt">DATABASE_GROUP</span><span class="p">:</span> <span class="nl">&amp;database_group</span>
<span class="hll"><span class="l l-Scalar l-Scalar-Plain">MY_GROUP</span>
</span>
<span class="c1"># ... other irrelevant sections</span>
<span class="nt">TIME_SEGMENTS</span><span class="p">:</span> <span class="nl">&amp;time_segments</span>
<span class="hll"> <span class="nt">TYPE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">PERIODIC</span>
</span><span class="hll"> <span class="nt">FILE</span><span class="p">:</span> <span class="s">&quot;data/external/timesegments_periodic.csv&quot;</span> <span class="c1"># make sure the three lines specified above are in the file</span>
</span> <span class="nt">INCLUDE_PAST_PERIODIC_SEGMENTS</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">FALSE</span>
<span class="c1"># No need to change this if you collected AWARE data on a database and your credentials are grouped under `MY_GROUP` in `.env`</span>
<span class="nt">DEVICE_DATA</span><span class="p">:</span>
<span class="nt">PHONE</span><span class="p">:</span>
<span class="nt">SOURCE</span><span class="p">:</span>
<span class="nt">TYPE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">DATABASE</span>
<span class="nt">DATABASE_GROUP</span><span class="p">:</span> <span class="nv">*database_group</span>
<span class="nt">DEVICE_ID_COLUMN</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">device_id</span> <span class="c1"># column name</span>
<span class="nt">TIMEZONE</span><span class="p">:</span>
<span class="nt">TYPE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">SINGLE</span> <span class="c1"># SINGLE or MULTIPLE</span>
<span class="nt">VALUE</span><span class="p">:</span> <span class="nv">*timezone</span>
<span class="c1">############## PHONE ###########################################################</span>
<span class="c1">################################################################################</span>
<span class="c1"># ... other irrelevant sections</span>
<span class="c1"># Communication call features config, TYPES and FEATURES keys need to match</span>
<span class="nt">PHONE_CALLS</span><span class="p">:</span>
<span class="nt">TABLE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">calls</span> <span class="c1"># change if your calls table has a different name</span>
<span class="nt">PROVIDERS</span><span class="p">:</span>
<span class="nt">RAPIDS</span><span class="p">:</span>
<span class="hll"> <span class="nt">COMPUTE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">True</span> <span class="c1"># set this to True!</span>
</span> <span class="nt">CALL_TYPES</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">...</span>
</code></pre></div></p>
</details>
</li>
<li>
<p>Run RAPIDS
<div class="highlight"><pre><span></span><code>./rapids -j1
</code></pre></div></p>
</li>
<li>The call features for daily and morning time segments will be in
<div class="highlight"><pre><span></span><code>/data/processed/features/p01/phone_calls.csv
</code></pre></div></li>
</ol>
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