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<a href="https://github.com/carissalow/rapids/edit/master/docs/setup/execution.md" title="Edit this page" class="md-content__button md-icon">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20.71 7.04c.39-.39.39-1.04 0-1.41l-2.34-2.34c-.37-.39-1.02-.39-1.41 0l-1.84 1.83 3.75 3.75M3 17.25V21h3.75L17.81 9.93l-3.75-3.75L3 17.25z"/></svg>
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<h1 id="execution">Execution<a class="headerlink" href="#execution" title="Permanent link">&para;</a></h1>
<p>After you have <a href="../installation">installed</a> and <a href="../configuration">configured</a> RAPIDS, use the following command to execute it.</p>
<div class="highlight"><pre><span></span><code>./rapids -j1
</code></pre></div>
<div class="admonition done">
<p class="admonition-title">Ready to extract behavioral features</p>
<p>If you are ready to extract features head over to the <a href="../../features/feature-introduction/">Behavioral Features Introduction</a></p>
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<div class="admonition info">
<p class="admonition-title">Info</p>
<p>The script <code class="highlight">./rapids</code> is a wrapper around Snakemake so you can pass any parameters that Snakemake accepts (e.g. <code>-j1</code>). </p>
</div>
<div class="admonition hint">
<p class="admonition-title">Updating RAPIDS output after modifying <code>config.yaml</code></p>
<p>Any changes to the <code>config.yaml</code> file will be applied automatically and only the relevant files will be updated. This means that after modifying the features list for <code>PHONE_MESSAGE</code> for example, RAPIDS will update the output file with the correct features.</p>
</div>
<div class="admonition hint">
<p class="admonition-title">Multi-core</p>
<p>You can run RAPIDS over multiple cores by modifying the <code>-j</code> argument (e.g. use <code>-j8</code> to use 8 cores). <strong>However</strong>, take into account that this means multiple sensor datasets for different participants will be load in memory at the same time. If RAPIDS crashes because it ran out of memory reduce the number of cores and try again.</p>
<p>As reference, we have run RAPIDS over 12 cores and 32 Gb of RAM without problems for a study with 200 participants with 14 days of low-frequency smartphone data (no accelerometer, gyroscope, or magnetometer).</p>
</div>
<div class="admonition hint">
<p class="admonition-title">Forcing a complete rerun</p>
<p>If you want to update your data from your database or rerun the whole pipeline from scratch run one or both of the following commands depending on the devices you are using:</p>
<div class="highlight"><pre><span></span><code>./rapids -j1 -R download_phone_data
./rapids -j1 -R download_fitbit_data
</code></pre></div>
</div>
<div class="admonition hint">
<p class="admonition-title">Deleting RAPIDS output</p>
<p>If you want to delete all the output files RAPIDS produces you can execute the following command:</p>
<div class="highlight"><pre><span></span><code>./rapids -j1 --delete-all-output
</code></pre></div>
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