junos
/
rapids
1
0
Fork 0
Code Issues Pull Requests Projects Releases Wiki Activity
rapids/0.4/file-structure/index.html

1347 lines
35 KiB
HTML
Raw Blame History

<!doctype html>
<html lang="en" class="no-js">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width,initial-scale=1">
<link rel="canonical" href="https://www.rapids.science/file-structure/">
<link rel="icon" href="../assets/images/favicon.png">
<meta name="generator" content="mkdocs-1.1.2, mkdocs-material-7.0.7+insiders-2.4.0">
<title>File Structure - RAPIDS</title>
<link rel="stylesheet" href="../assets/stylesheets/main.ec3b3678.min.css">
<link rel="stylesheet" href="../assets/stylesheets/palette.de2705de.min.css">
<link rel="preconnect" href="https://fonts.gstatic.com" crossorigin>
<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:300,400,400i,700%7CRoboto+Mono&display=fallback">
<style>:root{--md-text-font-family:"Roboto";--md-code-font-family:"Roboto Mono"}</style>
<link rel="stylesheet" href="../stylesheets/extra.css">
</head>
<body dir="ltr" data-md-color-scheme="default" data-md-color-primary="blue" data-md-color-accent="blue">
<script>function __prefix(e){return new URL("..",location).pathname+"."+e}function __get(e,t=localStorage){return JSON.parse(t.getItem(__prefix(e)))}</script>
<script>var palette=__get("__palette");if(null!==palette&&"object"==typeof palette.color)for(var key in palette.color)document.body.setAttribute("data-md-color-"+key,palette.color[key])</script>
<input class="md-toggle" data-md-toggle="drawer" type="checkbox" id="__drawer" autocomplete="off">
<input class="md-toggle" data-md-toggle="search" type="checkbox" id="__search" autocomplete="off">
<label class="md-overlay" for="__drawer"></label>
<div data-md-component="skip">
<a href="#file-structure" class="md-skip">
Skip to content
</a>
</div>
<div data-md-component="announce">
</div>
<div data-md-component="outdated" hidden>
<aside class="md-banner md-banner--warning">
<div class="md-banner__inner md-grid md-typeset">
You're not viewing the latest stable version of RAPIDS.
<a href="https://www.rapids.science/">
<strong> Click here to go to latest. </strong>
</a>
</div>
<script>var el=document.querySelector("[data-md-component=outdated]"),outdated=__get("__outdated",sessionStorage);!0===outdated&&el&&(el.hidden=!1)</script>
</aside>
</div>
<header class="md-header" data-md-component="header">
<nav class="md-header__inner md-grid" aria-label="Header">
<a href=".." title="RAPIDS" class="md-header__button md-logo" aria-label="RAPIDS" data-md-component="logo">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 18.31V20a2 2 0 0 1-2 2H7a2 2 0 0 1-2-2v-3.7c-.46-.18-1.05-.3-2-.3a1 1 0 0 1-1-1 1 1 0 0 1 1-1c.82 0 1.47.08 2 .21V12.3c-.46-.18-1.05-.3-2-.3a1 1 0 0 1-1-1 1 1 0 0 1 1-1c.82 0 1.47.08 2 .21V8.3C4.54 8.12 3.95 8 3 8a1 1 0 0 1-1-1 1 1 0 0 1 1-1c.82 0 1.47.08 2 .21V4a2 2 0 0 1 2-2h10a2 2 0 0 1 2 2v2.16c1.78.31 2.54.97 2.71 1.13.39.39.39 1.03 0 1.42-.39.39-.91.38-1.42 0 0 0-1.04-.71-3.29-.71-1.26 0-2.09.41-3.05.9-1.04.51-2.21 1.1-3.95 1.1-.36 0-.69 0-1-.04V7.95c.3.05.63.05 1 .05 1.26 0 2.09-.41 3.05-.89C14.09 6.59 15.27 6 17 6V4H7v16h10v-2c1.5 0 1.97.29 2 .31M17 10c-1.73 0-2.91.59-3.95 1.11-.96.48-1.79.89-3.05.89-.37 0-.7 0-1-.05v2.01c.31.04.64.04 1 .04 1.74 0 2.91-.59 3.95-1.1.96-.48 1.79-.9 3.05-.9 2.25 0 3.29.71 3.29.71.51.39 1.03.39 1.42 0 .39-.39.39-1.02 0-1.42C21.5 11.08 20.25 10 17 10m0 4c-1.73 0-2.91.59-3.95 1.11-.96.48-1.79.89-3.05.89-.37 0-.7 0-1-.05v2.01c.31.04.64.04 1 .04 1.74 0 2.91-.59 3.95-1.1.96-.48 1.79-.9 3.05-.9 2.25 0 3.29.71 3.29.71.51.39 1.03.39 1.42 0 .39-.39.39-1.02 0-1.42C21.5 15.08 20.25 14 17 14z"/></svg>
</a>
<label class="md-header__button md-icon" for="__drawer">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M3 6h18v2H3V6m0 5h18v2H3v-2m0 5h18v2H3v-2z"/></svg>
</label>
<div class="md-header__title" data-md-component="header-title">
<div class="md-header__ellipsis">
<div class="md-header__topic">
<span class="md-ellipsis">
RAPIDS
</span>
</div>
<div class="md-header__topic" data-md-component="header-topic">
<span class="md-ellipsis">
File Structure
</span>
</div>
</div>
</div>
<form class="md-header__option" data-md-component="palette">
<input class="md-option" data-md-color-media="" data-md-color-scheme="default" data-md-color-primary="blue" data-md-color-accent="blue" type="radio" name="__palette" id="__palette_1">
<label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M17 7H7a5 5 0 0 0-5 5 5 5 0 0 0 5 5h10a5 5 0 0 0 5-5 5 5 0 0 0-5-5m0 8a3 3 0 0 1-3-3 3 3 0 0 1 3-3 3 3 0 0 1 3 3 3 3 0 0 1-3 3z"/></svg>
</label>
<input class="md-option" data-md-color-media="" data-md-color-scheme="slate" data-md-color-primary="blue" data-md-color-accent="blue" type="radio" name="__palette" id="__palette_2">
<label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M7 10a2 2 0 0 1 2 2 2 2 0 0 1-2 2 2 2 0 0 1-2-2 2 2 0 0 1 2-2m10-3a5 5 0 0 1 5 5 5 5 0 0 1-5 5H7a5 5 0 0 1-5-5 5 5 0 0 1 5-5h10M7 9a3 3 0 0 0-3 3 3 3 0 0 0 3 3h10a3 3 0 0 0 3-3 3 3 0 0 0-3-3H7z"/></svg>
</label>
</form>
<label class="md-header__button md-icon" for="__search">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5z"/></svg>
</label>
<div class="md-search" data-md-component="search" role="dialog">
<label class="md-search__overlay" for="__search"></label>
<div class="md-search__inner" role="search">
<form class="md-search__form" name="search">
<input type="text" class="md-search__input" name="query" aria-label="Search" placeholder="Search" autocapitalize="off" autocorrect="off" autocomplete="off" spellcheck="false" data-md-component="search-query" required>
<label class="md-search__icon md-icon" for="__search">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5z"/></svg>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11h12z"/></svg>
</label>
<nav class="md-search__options" aria-label="Search">
<button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41z"/></svg>
</button>
</nav>
<div class="md-search__suggest" data-md-component="search-suggest"></div>
</form>
<div class="md-search__output">
<div class="md-search__scrollwrap" data-md-scrollfix>
<div class="md-search-result" data-md-component="search-result">
<div class="md-search-result__meta">
Initializing search
</div>
<ol class="md-search-result__list"></ol>
</div>
</div>
</div>
</div>
</div>
<div class="md-header__source">
<a href="https://github.com/carissalow/rapids/" title="Go to repository" class="md-source" data-md-component="source">
<div class="md-source__icon md-icon">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81z"/></svg>
</div>
<div class="md-source__repository">
carissalow/rapids
</div>
</a>
</div>
</nav>
</header>
<div class="md-container" data-md-component="container">
<main class="md-main" data-md-component="main">
<div class="md-main__inner md-grid">
<div class="md-sidebar md-sidebar--primary" data-md-component="sidebar" data-md-type="navigation" >
<div class="md-sidebar__scrollwrap">
<div class="md-sidebar__inner">
<nav class="md-nav md-nav--primary" aria-label="Navigation" data-md-level="0">
<label class="md-nav__title" for="__drawer">
<a href=".." title="RAPIDS" class="md-nav__button md-logo" aria-label="RAPIDS" data-md-component="logo">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 18.31V20a2 2 0 0 1-2 2H7a2 2 0 0 1-2-2v-3.7c-.46-.18-1.05-.3-2-.3a1 1 0 0 1-1-1 1 1 0 0 1 1-1c.82 0 1.47.08 2 .21V12.3c-.46-.18-1.05-.3-2-.3a1 1 0 0 1-1-1 1 1 0 0 1 1-1c.82 0 1.47.08 2 .21V8.3C4.54 8.12 3.95 8 3 8a1 1 0 0 1-1-1 1 1 0 0 1 1-1c.82 0 1.47.08 2 .21V4a2 2 0 0 1 2-2h10a2 2 0 0 1 2 2v2.16c1.78.31 2.54.97 2.71 1.13.39.39.39 1.03 0 1.42-.39.39-.91.38-1.42 0 0 0-1.04-.71-3.29-.71-1.26 0-2.09.41-3.05.9-1.04.51-2.21 1.1-3.95 1.1-.36 0-.69 0-1-.04V7.95c.3.05.63.05 1 .05 1.26 0 2.09-.41 3.05-.89C14.09 6.59 15.27 6 17 6V4H7v16h10v-2c1.5 0 1.97.29 2 .31M17 10c-1.73 0-2.91.59-3.95 1.11-.96.48-1.79.89-3.05.89-.37 0-.7 0-1-.05v2.01c.31.04.64.04 1 .04 1.74 0 2.91-.59 3.95-1.1.96-.48 1.79-.9 3.05-.9 2.25 0 3.29.71 3.29.71.51.39 1.03.39 1.42 0 .39-.39.39-1.02 0-1.42C21.5 11.08 20.25 10 17 10m0 4c-1.73 0-2.91.59-3.95 1.11-.96.48-1.79.89-3.05.89-.37 0-.7 0-1-.05v2.01c.31.04.64.04 1 .04 1.74 0 2.91-.59 3.95-1.1.96-.48 1.79-.9 3.05-.9 2.25 0 3.29.71 3.29.71.51.39 1.03.39 1.42 0 .39-.39.39-1.02 0-1.42C21.5 15.08 20.25 14 17 14z"/></svg>
</a>
RAPIDS
</label>
<div class="md-nav__source">
<a href="https://github.com/carissalow/rapids/" title="Go to repository" class="md-source" data-md-component="source">
<div class="md-source__icon md-icon">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81z"/></svg>
</div>
<div class="md-source__repository">
carissalow/rapids
</div>
</a>
</div>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href=".." class="md-nav__link">
Home
</a>
</li>
<li class="md-nav__item md-nav__item--active md-nav__item--section md-nav__item--nested">
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_2" type="checkbox" id="__nav_2" checked>
<label class="md-nav__link" for="__nav_2">
Setup
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" aria-label="Setup" data-md-level="1">
<label class="md-nav__title" for="__nav_2">
<span class="md-nav__icon md-icon"></span>
Setup
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item md-nav__item--active">
<input class="md-nav__toggle md-toggle" data-md-toggle="toc" type="checkbox" id="__toc">
<a href="./" class="md-nav__link md-nav__link--active">
File Structure
</a>
</li>
<li class="md-nav__item">
<a href="../setup/installation/" class="md-nav__link">
Installation
</a>
</li>
<li class="md-nav__item">
<a href="../setup/configuration/" class="md-nav__link">
Configuration
</a>
</li>
<li class="md-nav__item">
<a href="../setup/execution/" class="md-nav__link">
Execution
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_3" type="checkbox" id="__nav_3" >
<label class="md-nav__link" for="__nav_3">
Example Workflows
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" aria-label="Example Workflows" data-md-level="1">
<label class="md-nav__title" for="__nav_3">
<span class="md-nav__icon md-icon"></span>
Example Workflows
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../workflow-examples/minimal/" class="md-nav__link">
Minimal
</a>
</li>
<li class="md-nav__item">
<a href="../workflow-examples/analysis/" class="md-nav__link">
Analysis
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4" type="checkbox" id="__nav_4" >
<label class="md-nav__link" for="__nav_4">
Behavioral Features
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" aria-label="Behavioral Features" data-md-level="1">
<label class="md-nav__title" for="__nav_4">
<span class="md-nav__icon md-icon"></span>
Behavioral Features
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../features/feature-introduction/" class="md-nav__link">
Introduction
</a>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4_2" type="checkbox" id="__nav_4_2" >
<label class="md-nav__link" for="__nav_4_2">
Phone
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" aria-label="Phone" data-md-level="2">
<label class="md-nav__title" for="__nav_4_2">
<span class="md-nav__icon md-icon"></span>
Phone
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../features/phone-accelerometer/" class="md-nav__link">
Phone Accelerometer
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-activity-recognition/" class="md-nav__link">
Phone Activity Recognition
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-applications-crashes/" class="md-nav__link">
Phone Applications Crashes
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-applications-foreground/" class="md-nav__link">
Phone Applications Foreground
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-applications-notifications/" class="md-nav__link">
Phone Applications Notifications
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-aware-log/" class="md-nav__link">
Phone Aware Log
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-battery/" class="md-nav__link">
Phone Battery
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-bluetooth/" class="md-nav__link">
Phone Bluetooth
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-calls/" class="md-nav__link">
Phone Calls
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-conversation/" class="md-nav__link">
Phone Conversation
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-data-yield/" class="md-nav__link">
Phone Data Yield
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-keyboard/" class="md-nav__link">
Phone Keyboard
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-light/" class="md-nav__link">
Phone Light
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-locations/" class="md-nav__link">
Phone Locations
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-messages/" class="md-nav__link">
Phone Messages
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-screen/" class="md-nav__link">
Phone Screen
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-wifi-connected/" class="md-nav__link">
Phone WiFI Connected
</a>
</li>
<li class="md-nav__item">
<a href="../features/phone-wifi-visible/" class="md-nav__link">
Phone WiFI Visible
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--nested">
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4_3" type="checkbox" id="__nav_4_3" >
<label class="md-nav__link" for="__nav_4_3">
Fitbit
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" aria-label="Fitbit" data-md-level="2">
<label class="md-nav__title" for="__nav_4_3">
<span class="md-nav__icon md-icon"></span>
Fitbit
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../features/fitbit-data-yield/" class="md-nav__link">
Fitbit Data Yield
</a>
</li>
<li class="md-nav__item">
<a href="../features/fitbit-heartrate-summary/" class="md-nav__link">
Fitbit Heart Rate Summary
</a>
</li>
<li class="md-nav__item">
<a href="../features/fitbit-heartrate-intraday/" class="md-nav__link">
Fitbit Heart Rate Intraday
</a>
</li>
<li class="md-nav__item">
<a href="../features/fitbit-sleep-summary/" class="md-nav__link">
Fitbit Sleep Summary
</a>
</li>
<li class="md-nav__item">
<a href="../features/fitbit-steps-summary/" class="md-nav__link">
Fitbit Steps Summary
</a>
</li>
<li class="md-nav__item">
<a href="../features/fitbit-steps-intraday/" class="md-nav__link">
Fitbit Steps Intraday
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item">
<a href="../features/add-new-features/" class="md-nav__link">
Add New Features
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_5" type="checkbox" id="__nav_5" >
<label class="md-nav__link" for="__nav_5">
Visualizations
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" aria-label="Visualizations" data-md-level="1">
<label class="md-nav__title" for="__nav_5">
<span class="md-nav__icon md-icon"></span>
Visualizations
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../visualizations/data-quality-visualizations/" class="md-nav__link">
Data Quality
</a>
</li>
<li class="md-nav__item">
<a href="../visualizations/feature-visualizations/" class="md-nav__link">
Features
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_6" type="checkbox" id="__nav_6" >
<label class="md-nav__link" for="__nav_6">
Developers
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" aria-label="Developers" data-md-level="1">
<label class="md-nav__title" for="__nav_6">
<span class="md-nav__icon md-icon"></span>
Developers
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../developers/git-flow/" class="md-nav__link">
Git Flow
</a>
</li>
<li class="md-nav__item">
<a href="../developers/remote-support/" class="md-nav__link">
Remote Support
</a>
</li>
<li class="md-nav__item">
<a href="../developers/virtual-environments/" class="md-nav__link">
Virtual Environments
</a>
</li>
<li class="md-nav__item">
<a href="../developers/documentation/" class="md-nav__link">
Documentation
</a>
</li>
<li class="md-nav__item">
<a href="../developers/testing/" class="md-nav__link">
Testing
</a>
</li>
<li class="md-nav__item">
<a href="../developers/test-cases/" class="md-nav__link">
Test cases
</a>
</li>
</ul>
</nav>
</li>
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_7" type="checkbox" id="__nav_7" >
<label class="md-nav__link" for="__nav_7">
Others
<span class="md-nav__icon md-icon"></span>
</label>
<nav class="md-nav" aria-label="Others" data-md-level="1">
<label class="md-nav__title" for="__nav_7">
<span class="md-nav__icon md-icon"></span>
Others
</label>
<ul class="md-nav__list" data-md-scrollfix>
<li class="md-nav__item">
<a href="../migrating-from-old-versions/" class="md-nav__link">
Migrating from beta
</a>
</li>
<li class="md-nav__item">
<a href="../code_of_conduct/" class="md-nav__link">
Code of Conduct
</a>
</li>
<li class="md-nav__item">
<a href="../faq/" class="md-nav__link">
FAQ
</a>
</li>
<li class="md-nav__item">
<a href="../team/" class="md-nav__link">
Team
</a>
</li>
<li class="md-nav__item">
<a href="../change-log/" class="md-nav__link">
Change Log
</a>
</li>
<li class="md-nav__item">
<a href="../citation/" class="md-nav__link">
Citation
</a>
</li>
</ul>
</nav>
</li>
</ul>
</nav>
</div>
</div>
</div>
<div class="md-sidebar md-sidebar--secondary" data-md-component="sidebar" data-md-type="toc" >
<div class="md-sidebar__scrollwrap">
<div class="md-sidebar__inner">
<nav class="md-nav md-nav--secondary" aria-label="Table of contents">
</nav>
</div>
</div>
</div>
<div class="md-content" data-md-component="content">
<article class="md-content__inner md-typeset">
<a href="https://github.com/carissalow/rapids/edit/master/docs/file-structure.md" title="Edit this page" class="md-content__button md-icon">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20.71 7.04c.39-.39.39-1.04 0-1.41l-2.34-2.34c-.37-.39-1.02-.39-1.41 0l-1.84 1.83 3.75 3.75M3 17.25V21h3.75L17.81 9.93l-3.75-3.75L3 17.25z"/></svg>
</a>
<h1 id="file-structure">File Structure<a class="headerlink" href="#file-structure" title="Permanent link">&para;</a></h1>
<div class="admonition tip">
<p class="admonition-title">Tip</p>
<ul>
<li>Read this page if you want to learn more about how RAPIDS is structured. If you want to start using it go to <a href="../setup/installation/">Installation</a>, then to <a href="../setup/configuration/">Configuration</a>, and then to <a href="../setup/execution/">Execution</a></li>
<li>All paths mentioned in this page are relative to RAPIDS&rsquo; root folder.</li>
</ul>
</div>
<p>If you want to extract the behavioral features that RAPIDS offers, you will only have to create or modify the <a href="../setup/configuration/#database-credentials"><code>.env</code> file</a>, <a href="../setup/configuration/#participant-files">participants files</a>, <a href="../setup/configuration/#time-segments">time segment files</a>, and the <code>config.yaml</code> file as instructed in the <a href="../setup/configuration">Configuration page</a>. The <code>config.yaml</code> file is the heart of RAPIDS and includes parameters to manage participants, data sources, sensor data, visualizations and more.</p>
<p>All data is saved in <code>data/</code>. The <code>data/external/</code> folder stores any data imported or created by the user, <code>data/raw/</code> stores sensor data as imported from your database, <code>data/interim/</code> has intermediate files necessary to compute behavioral features from raw data, and <code>data/processed/</code> has all the final files with the behavioral features in folders per participant and sensor.</p>
<p>RAPIDS source code is saved in <code>src/</code>. The <code>src/data/</code> folder stores scripts to download, clean and pre-process sensor data, <code>src/features</code> has scripts to extract behavioral features organized in their respective sensor subfolders , <code>src/models/</code> can host any script to create models or statistical analyses with the behavioral features you extract, and <code>src/visualization/</code> has scripts to create plots of the raw and processed data. There are other files and folders but only relevant if you are interested in extending RAPIDS (e.g. virtual env files, docs, tests, Dockerfile, the Snakefile, etc.). </p>
<p>In the figure below, we represent the interactions between users and files. After a user modifies the configuration files mentioned above, the <code>Snakefile</code> file will search for and execute the Snakemake rules that contain the Python or R scripts necessary to generate or update the required output files (behavioral features, plots, etc.).</p>
<figure>
<img src="../img/files.png" max-width="100%" />
<figcaption>Interaction diagram between the user, and important files in RAPIDS</figcaption>
</figure>
</article>
</div>
</div>
</main>
<footer class="md-footer">
<nav class="md-footer__inner md-grid" aria-label="Footer">
<a href=".." class="md-footer__link md-footer__link--prev" rel="prev">
<div class="md-footer__button md-icon">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11h12z"/></svg>
</div>
<div class="md-footer__title">
<div class="md-ellipsis">
<span class="md-footer__direction">
Previous
</span>
Home
</div>
</div>
</a>
<a href="../setup/installation/" class="md-footer__link md-footer__link--next" rel="next">
<div class="md-footer__title">
<div class="md-ellipsis">
<span class="md-footer__direction">
Next
</span>
Installation
</div>
</div>
<div class="md-footer__button md-icon">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M4 11v2h12l-5.5 5.5 1.42 1.42L19.84 12l-7.92-7.92L10.5 5.5 16 11H4z"/></svg>
</div>
</a>
</nav>
<div class="md-footer-meta md-typeset">
<div class="md-footer-meta__inner md-grid">
<div class="md-footer-copyright">
<div class="md-footer-copyright__highlight">
Released under AGPL
</div>
Made with
<a href="https://squidfunk.github.io/mkdocs-material/" target="_blank" rel="noopener">
Material for MkDocs Insiders
</a>
</div>
<div class="md-footer-social">
<a href="https://twitter.com/julio_ui" target="_blank" rel="noopener" title="twitter.com" class="md-footer-social__link">
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path d="M459.37 151.716c.325 4.548.325 9.097.325 13.645 0 138.72-105.583 298.558-298.558 298.558-59.452 0-114.68-17.219-161.137-47.106 8.447.974 16.568 1.299 25.34 1.299 49.055 0 94.213-16.568 130.274-44.832-46.132-.975-84.792-31.188-98.112-72.772 6.498.974 12.995 1.624 19.818 1.624 9.421 0 18.843-1.3 27.614-3.573-48.081-9.747-84.143-51.98-84.143-102.985v-1.299c13.969 7.797 30.214 12.67 47.431 13.319-28.264-18.843-46.781-51.005-46.781-87.391 0-19.492 5.197-37.36 14.294-52.954 51.655 63.675 129.3 105.258 216.365 109.807-1.624-7.797-2.599-15.918-2.599-24.04 0-57.828 46.782-104.934 104.934-104.934 30.213 0 57.502 12.67 76.67 33.137 23.715-4.548 46.456-13.32 66.599-25.34-7.798 24.366-24.366 44.833-46.132 57.827 21.117-2.273 41.584-8.122 60.426-16.243-14.292 20.791-32.161 39.308-52.628 54.253z"/></svg>
</a>
</div>
</div>
</div>
</footer>
</div>
<div class="md-dialog" data-md-component="dialog">
<div class="md-dialog__inner md-typeset"></div>
</div>
<script id="__config" type="application/json">{"base": "..", "features": ["navigation.sections", "search.suggest", "search.highlight"], "translations": {"clipboard.copy": "Copy to clipboard", "clipboard.copied": "Copied to clipboard", "search.config.lang": "en", "search.config.pipeline": "trimmer, stopWordFilter", "search.config.separator": "[\\s\\-]+", "search.placeholder": "Search", "search.result.placeholder": "Type to start searching", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.term.missing": "Missing"}, "search": "../assets/javascripts/workers/search.d10a1f1d.min.js", "version": {"provider": "mike"}}</script>
<script src="../assets/javascripts/bundle.9aafa2c6.min.js"></script>
<script src="https://polyfill.io/v3/polyfill.min.js?features=es6"></script>
<script src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js"></script>
</body>
</html>
Reference in New Issue View Git Blame Copy Permalink