34 lines
1.1 KiB
Bash
Executable File
34 lines
1.1 KiB
Bash
Executable File
#!/bin/bash
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# Commmands necessary to setup and run the tests for RAPIDS
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echo Setting up for testing...
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# Uncomment the section below if neccessary to remove old files when testing locally
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# echo deleting old data...
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# rm -rf data/raw/*
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# rm -rf data/processed/*
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# rm -rf data/interim/*
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# rm -rf data/external/test*
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echo Copying files...
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cp -r tests/data/raw/* data/raw
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cp tests/data/external/* data/external
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# Uncomment the section below to backup snakemake file when testing locally
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# echo Backing up preprocessing...
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# cp rules/preprocessing.snakefile bak
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echo Disabling downloading of dataset...
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sed -e '27,39 s/^/#/' -e 's/rules.download_dataset.output/"data\/raw\/\{pid\}\/\{sensor\}_raw\.csv"/' rules/preprocessing.snakefile > tmp
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cp tmp rules/preprocessing.snakefile
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echo Running RAPIDS Pipeline on testdata...
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snakemake --profile tests/settings
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echo Running tests on data produced...
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python -m unittest discover tests/scripts/ -v
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# Uncomment to return snakemake back to the original version when testing locally
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# echo Cleaning up...
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# mv bak rules/preprocessing.snakefile
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# rm tmp |