1942 lines
44 KiB
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1942 lines
44 KiB
HTML
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<title>Introduction - RAPIDS</title>
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You're not viewing the latest stable version of RAPIDS.
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RAPIDS
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Introduction
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Initializing search
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carissalow/rapids
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81z"/></svg>
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<div class="md-source__repository">
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carissalow/rapids
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</a>
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Home
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Setup
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<nav class="md-nav" aria-label="Setup" data-md-level="1">
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Setup
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<a href="../../setup/overview/" class="md-nav__link">
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Overview
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<li class="md-nav__item">
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<a href="../../workflow-examples/minimal/" class="md-nav__link">
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Minimal Example
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Installation
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Configuration
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<a href="../../setup/execution/" class="md-nav__link">
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Execution
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Citation
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</ul>
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</nav>
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<li class="md-nav__item md-nav__item--active md-nav__item--section md-nav__item--nested">
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<label class="md-nav__link" for="__nav_3">
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Data Streams
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<nav class="md-nav" aria-label="Data Streams" data-md-level="1">
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<label class="md-nav__title" for="__nav_3">
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<span class="md-nav__icon md-icon"></span>
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Data Streams
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<a href="./" class="md-nav__link md-nav__link--active">
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Introduction
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<li class="md-nav__item md-nav__item--nested">
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<label class="md-nav__link" for="__nav_3_2">
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Phone
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Phone" data-md-level="2">
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<label class="md-nav__title" for="__nav_3_2">
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<span class="md-nav__icon md-icon"></span>
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Phone
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../aware-mysql/" class="md-nav__link">
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aware_mysql
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</a>
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<li class="md-nav__item">
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<a href="../aware-csv/" class="md-nav__link">
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aware_csv
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../aware-influxdb/" class="md-nav__link">
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aware_influxdb (beta)
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</a>
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<li class="md-nav__item">
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<a href="../mandatory-phone-format/" class="md-nav__link">
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Mandatory Phone Format
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</a>
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</ul>
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</nav>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_3_3" type="checkbox" id="__nav_3_3" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_3_3">
|
|
Fitbit
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Fitbit" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_3_3">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Fitbit
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../fitbitjson-mysql/" class="md-nav__link">
|
|
fitbitjson_mysql
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../fitbitjson-csv/" class="md-nav__link">
|
|
fitbitjson_csv
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../fitbitparsed-mysql/" class="md-nav__link">
|
|
fitbitparsed_mysql
|
|
</a>
|
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</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../fitbitparsed-csv/" class="md-nav__link">
|
|
fitbitparsed_csv
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../mandatory-fitbit-format/" class="md-nav__link">
|
|
Mandatory Fitbit Format
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
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</ul>
|
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</nav>
|
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</li>
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|
|
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|
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<li class="md-nav__item md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_3_4" type="checkbox" id="__nav_3_4" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_3_4">
|
|
Empatica
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Empatica" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_3_4">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Empatica
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../empatica-zip/" class="md-nav__link">
|
|
empatica_zip
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../mandatory-empatica-format/" class="md-nav__link">
|
|
Mandatory Empatica Format
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
|
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|
|
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|
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|
|
|
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|
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|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../add-new-data-streams/" class="md-nav__link">
|
|
Add New Data Streams
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
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|
|
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4" type="checkbox" id="__nav_4" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_4">
|
|
Behavioral Features
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Behavioral Features" data-md-level="1">
|
|
<label class="md-nav__title" for="__nav_4">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Behavioral Features
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/feature-introduction/" class="md-nav__link">
|
|
Introduction
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4_2" type="checkbox" id="__nav_4_2" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_4_2">
|
|
Phone
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Phone" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_4_2">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Phone
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-accelerometer/" class="md-nav__link">
|
|
Phone Accelerometer
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-activity-recognition/" class="md-nav__link">
|
|
Phone Activity Recognition
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-applications-crashes/" class="md-nav__link">
|
|
Phone Applications Crashes
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-applications-foreground/" class="md-nav__link">
|
|
Phone Applications Foreground
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-applications-notifications/" class="md-nav__link">
|
|
Phone Applications Notifications
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-battery/" class="md-nav__link">
|
|
Phone Battery
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-bluetooth/" class="md-nav__link">
|
|
Phone Bluetooth
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-calls/" class="md-nav__link">
|
|
Phone Calls
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-conversation/" class="md-nav__link">
|
|
Phone Conversation
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-data-yield/" class="md-nav__link">
|
|
Phone Data Yield
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-keyboard/" class="md-nav__link">
|
|
Phone Keyboard
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-light/" class="md-nav__link">
|
|
Phone Light
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-locations/" class="md-nav__link">
|
|
Phone Locations
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-log/" class="md-nav__link">
|
|
Phone Log
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-messages/" class="md-nav__link">
|
|
Phone Messages
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-screen/" class="md-nav__link">
|
|
Phone Screen
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-wifi-connected/" class="md-nav__link">
|
|
Phone WiFI Connected
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-wifi-visible/" class="md-nav__link">
|
|
Phone WiFI Visible
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4_3" type="checkbox" id="__nav_4_3" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_4_3">
|
|
Fitbit
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Fitbit" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_4_3">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Fitbit
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-calories-intraday/" class="md-nav__link">
|
|
Fitbit Calories Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-data-yield/" class="md-nav__link">
|
|
Fitbit Data Yield
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-heartrate-summary/" class="md-nav__link">
|
|
Fitbit Heart Rate Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-heartrate-intraday/" class="md-nav__link">
|
|
Fitbit Heart Rate Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-sleep-summary/" class="md-nav__link">
|
|
Fitbit Sleep Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-sleep-intraday/" class="md-nav__link">
|
|
Fitbit Sleep Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-steps-summary/" class="md-nav__link">
|
|
Fitbit Steps Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-steps-intraday/" class="md-nav__link">
|
|
Fitbit Steps Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4_4" type="checkbox" id="__nav_4_4" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_4_4">
|
|
Empatica
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Empatica" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_4_4">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Empatica
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-accelerometer/" class="md-nav__link">
|
|
Empatica Accelerometer
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-heartrate/" class="md-nav__link">
|
|
Empatica Heart Rate
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-temperature/" class="md-nav__link">
|
|
Empatica Temperature
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-electrodermal-activity/" class="md-nav__link">
|
|
Empatica Electrodermal Activity
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-blood-volume-pulse/" class="md-nav__link">
|
|
Empatica Blood Volume Pulse
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-inter-beat-interval/" class="md-nav__link">
|
|
Empatica Inter Beat Interval
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-tags/" class="md-nav__link">
|
|
Empatica Tags
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/add-new-features/" class="md-nav__link">
|
|
Add New Features
|
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<h1 id="data-streams-introduction">Data Streams Introduction<a class="headerlink" href="#data-streams-introduction" title="Permanent link">¶</a></h1>
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<p>A data stream is a set of sensor data collected using a specific type of <strong>device</strong> with a specific <strong>format</strong> and stored in a specific <strong>container</strong>.</p>
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<p>For example, the <code>aware_mysql</code> data stream handles smartphone data (<strong>device</strong>) collected with the <a href="https://awareframework.com/">AWARE Framework</a> (<strong>format</strong>) stored in a MySQL database (<strong>container</strong>). Similarly, smartphone data collected with <a href="https://www.beiwe.org/">Beiwe</a> will have a different format and could be stored in a container like a PostgreSQL database or a CSV file.</p>
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<p>If you want to process a data stream using RAPIDS, make sure that your data is stored in a supported <strong>format</strong> and <strong>container</strong> (see table below). </p>
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<p>If RAPIDS doesn’t support your data stream yet (e.g. Beiwe data stored in PostgreSQL, or AWARE data stored in SQLite), you can always <a href="../add-new-data-streams">implement a new data stream</a>. If it’s something you think other people might be interested on, we will be happy to include your new data stream in RAPIDS, so get in touch!.</p>
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<p>Currently, you can add new data streams for smartphones, Fitbit, and Empatica devices. If you need RAPIDS to process data from <strong>other devices</strong>, like Oura Rings or Actigraph wearables, get in touch. It is a more complicated process that could take a couple of days to implement for someone familiar with R or Python, but we would be happy to work on it together.</p>
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<p>For reference, these are the data streams we currently support: </p>
|
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<table>
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<thead>
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<tr>
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<th>Data Stream</th>
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<th>Device</th>
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<th>Format</th>
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<td><code>aware_mysql</code></td>
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<td>Phone</td>
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<td>MySQL</td>
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