1160 lines
31 KiB
HTML
1160 lines
31 KiB
HTML
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<!doctype html>
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<html lang="en" class="no-js">
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<head>
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<meta charset="utf-8">
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<meta name="viewport" content="width=device-width,initial-scale=1">
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<link rel="shortcut icon" href="../../assets/images/favicon.png">
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<meta name="generator" content="mkdocs-1.1.2, mkdocs-material-6.1.4+insiders-1.9.0">
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<title>Features - RAPIDS</title>
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<link rel="stylesheet" href="../../assets/stylesheets/main.a2a6bca7.min.css">
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<link rel="stylesheet" href="../../assets/stylesheets/palette.c308bc62.min.css">
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<link href="https://fonts.gstatic.com" rel="preconnect" crossorigin>
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<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:300,400,400i,700%7CRoboto+Mono&display=fallback">
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<style>body,input{font-family:"Roboto",-apple-system,BlinkMacSystemFont,Helvetica,Arial,sans-serif}code,kbd,pre{font-family:"Roboto Mono",SFMono-Regular,Consolas,Menlo,monospace}</style>
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<link rel="stylesheet" href="../../stylesheets/extra.css">
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</head>
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<body dir="ltr" data-md-color-scheme="default" data-md-color-primary="blue" data-md-color-accent="blue">
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<script>var palette=JSON.parse(localStorage.getItem("__palette")||"{}");if(void 0!==palette.color)for(var key in palette.color)document.body.setAttribute("data-md-color-"+key,palette.color[key])</script>
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<input class="md-toggle" data-md-toggle="drawer" type="checkbox" id="__drawer" autocomplete="off">
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<input class="md-toggle" data-md-toggle="search" type="checkbox" id="__search" autocomplete="off">
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<label class="md-overlay" for="__drawer"></label>
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<div data-md-component="skip">
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<a href="#feature-visualizations" class="md-skip">
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Skip to content
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</a>
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</div>
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<div data-md-component="announce">
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</div>
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<header class="md-header" data-md-component="header">
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<nav class="md-header-nav md-grid" aria-label="Header">
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<a href="../.." title="RAPIDS" class="md-header-nav__button md-logo" aria-label="RAPIDS">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 18.31V20a2 2 0 01-2 2H7a2 2 0 01-2-2v-3.7c-.46-.18-1.05-.3-2-.3a1 1 0 01-1-1 1 1 0 011-1c.82 0 1.47.08 2 .21V12.3c-.46-.18-1.05-.3-2-.3a1 1 0 01-1-1 1 1 0 011-1c.82 0 1.47.08 2 .21V8.3C4.54 8.12 3.95 8 3 8a1 1 0 01-1-1 1 1 0 011-1c.82 0 1.47.08 2 .21V4a2 2 0 012-2h10a2 2 0 012 2v2.16c1.78.31 2.54.97 2.71 1.13.39.39.39 1.03 0 1.42-.39.39-.91.38-1.42 0 0 0-1.04-.71-3.29-.71-1.26 0-2.09.41-3.05.9-1.04.51-2.21 1.1-3.95 1.1-.36 0-.69 0-1-.04V7.95c.3.05.63.05 1 .05 1.26 0 2.09-.41 3.05-.89C14.09 6.59 15.27 6 17 6V4H7v16h10v-2c1.5 0 1.97.29 2 .31M17 10c-1.73 0-2.91.59-3.95 1.11-.96.48-1.79.89-3.05.89-.37 0-.7 0-1-.05v2.01c.31.04.64.04 1 .04 1.74 0 2.91-.59 3.95-1.1.96-.48 1.79-.9 3.05-.9 2.25 0 3.29.71 3.29.71.51.39 1.03.39 1.42 0 .39-.39.39-1.02 0-1.42C21.5 11.08 20.25 10 17 10m0 4c-1.73 0-2.91.59-3.95 1.11-.96.48-1.79.89-3.05.89-.37 0-.7 0-1-.05v2.01c.31.04.64.04 1 .04 1.74 0 2.91-.59 3.95-1.1.96-.48 1.79-.9 3.05-.9 2.25 0 3.29.71 3.29.71.51.39 1.03.39 1.42 0 .39-.39.39-1.02 0-1.42C21.5 15.08 20.25 14 17 14z"/></svg>
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</a>
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<label class="md-header-nav__button md-icon" for="__drawer">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M3 6h18v2H3V6m0 5h18v2H3v-2m0 5h18v2H3v-2z"/></svg>
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</label>
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<div class="md-header-nav__title" data-md-component="header-title">
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<div class="md-header-nav__ellipsis">
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<div class="md-header-nav__topic">
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<span class="md-ellipsis">
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RAPIDS
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</span>
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</div>
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<div class="md-header-nav__topic" data-md-component="header-topic">
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<span class="md-ellipsis">
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Features
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</span>
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</div>
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</div>
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</div>
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<div class="md-header-nav__options">
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<button class="md-header-nav__button md-icon" title="Switch to light mode" aria-label="Switch to light mode" data-md-option="palette" data-md-color-scheme="default" data-md-color-primary="blue" data-md-color-accent="blue" data-md-state="hidden">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M17 7H7a5 5 0 00-5 5 5 5 0 005 5h10a5 5 0 005-5 5 5 0 00-5-5m0 8a3 3 0 01-3-3 3 3 0 013-3 3 3 0 013 3 3 3 0 01-3 3z"/></svg>
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</button>
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||
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<button class="md-header-nav__button md-icon" title="Switch to dark mode" aria-label="Switch to dark mode" data-md-option="palette" data-md-color-scheme="slate" data-md-color-primary="blue" data-md-color-accent="blue" data-md-state="hidden">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M7 10a2 2 0 012 2 2 2 0 01-2 2 2 2 0 01-2-2 2 2 0 012-2m10-3a5 5 0 015 5 5 5 0 01-5 5H7a5 5 0 01-5-5 5 5 0 015-5h10M7 9a3 3 0 00-3 3 3 3 0 003 3h10a3 3 0 003-3 3 3 0 00-3-3H7z"/></svg>
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</button>
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</div>
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<label class="md-header-nav__button md-icon" for="__search">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0116 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 019.5 16 6.5 6.5 0 013 9.5 6.5 6.5 0 019.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5z"/></svg>
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</label>
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<div class="md-search" data-md-component="search" role="dialog">
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<label class="md-search__overlay" for="__search"></label>
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<div class="md-search__inner" role="search">
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<form class="md-search__form" name="search">
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<input type="text" class="md-search__input" name="query" aria-label="Search" placeholder="Search" autocapitalize="off" autocorrect="off" autocomplete="off" spellcheck="false" data-md-component="search-query" data-md-state="active">
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<label class="md-search__icon md-icon" for="__search">
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||
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0116 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 019.5 16 6.5 6.5 0 013 9.5 6.5 6.5 0 019.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5z"/></svg>
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11h12z"/></svg>
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</label>
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<button type="reset" class="md-search__icon md-icon" aria-label="Clear" data-md-component="search-reset" tabindex="-1">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41L17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41z"/></svg>
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||
</button>
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||
<div class="md-search__suggest" data-md-component="search-suggest"></div>
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||
</form>
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||
<div class="md-search__output">
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||
<div class="md-search__scrollwrap" data-md-scrollfix>
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||
<div class="md-search-result" data-md-component="search-result">
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||
<div class="md-search-result__meta">
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Initializing search
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</div>
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<ol class="md-search-result__list"></ol>
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||
</div>
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</div>
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||
</div>
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</div>
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||
</div>
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||
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||
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<div class="md-header-nav__source">
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||
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<a href="https://github.com/carissalow/rapids/" title="Go to repository" class="md-source">
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||
<div class="md-source__icon md-icon">
|
||
|
||
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05L244 40.45a28.87 28.87 0 00-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 01-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 000 40.81l195.61 195.6a28.86 28.86 0 0040.8 0l194.69-194.69a28.86 28.86 0 000-40.81z"/></svg>
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</div>
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<div class="md-source__repository">
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carissalow/rapids
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</div>
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||
</a>
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||
</div>
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||
|
||
</nav>
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||
</header>
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||
|
||
<div class="md-container" data-md-component="container">
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||
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||
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<main class="md-main" data-md-component="main">
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<div class="md-main__inner md-grid">
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||
|
||
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||
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||
<div class="md-sidebar md-sidebar--primary" data-md-component="navigation" >
|
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<div class="md-sidebar__scrollwrap">
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||
<div class="md-sidebar__inner">
|
||
|
||
|
||
<nav class="md-nav md-nav--primary" aria-label="Navigation" data-md-level="0">
|
||
<label class="md-nav__title" for="__drawer">
|
||
<a href="../.." title="RAPIDS" class="md-nav__button md-logo" aria-label="RAPIDS">
|
||
|
||
|
||
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 18.31V20a2 2 0 01-2 2H7a2 2 0 01-2-2v-3.7c-.46-.18-1.05-.3-2-.3a1 1 0 01-1-1 1 1 0 011-1c.82 0 1.47.08 2 .21V12.3c-.46-.18-1.05-.3-2-.3a1 1 0 01-1-1 1 1 0 011-1c.82 0 1.47.08 2 .21V8.3C4.54 8.12 3.95 8 3 8a1 1 0 01-1-1 1 1 0 011-1c.82 0 1.47.08 2 .21V4a2 2 0 012-2h10a2 2 0 012 2v2.16c1.78.31 2.54.97 2.71 1.13.39.39.39 1.03 0 1.42-.39.39-.91.38-1.42 0 0 0-1.04-.71-3.29-.71-1.26 0-2.09.41-3.05.9-1.04.51-2.21 1.1-3.95 1.1-.36 0-.69 0-1-.04V7.95c.3.05.63.05 1 .05 1.26 0 2.09-.41 3.05-.89C14.09 6.59 15.27 6 17 6V4H7v16h10v-2c1.5 0 1.97.29 2 .31M17 10c-1.73 0-2.91.59-3.95 1.11-.96.48-1.79.89-3.05.89-.37 0-.7 0-1-.05v2.01c.31.04.64.04 1 .04 1.74 0 2.91-.59 3.95-1.1.96-.48 1.79-.9 3.05-.9 2.25 0 3.29.71 3.29.71.51.39 1.03.39 1.42 0 .39-.39.39-1.02 0-1.42C21.5 11.08 20.25 10 17 10m0 4c-1.73 0-2.91.59-3.95 1.11-.96.48-1.79.89-3.05.89-.37 0-.7 0-1-.05v2.01c.31.04.64.04 1 .04 1.74 0 2.91-.59 3.95-1.1.96-.48 1.79-.9 3.05-.9 2.25 0 3.29.71 3.29.71.51.39 1.03.39 1.42 0 .39-.39.39-1.02 0-1.42C21.5 15.08 20.25 14 17 14z"/></svg>
|
||
|
||
</a>
|
||
RAPIDS
|
||
</label>
|
||
|
||
<div class="md-nav__source">
|
||
|
||
<a href="https://github.com/carissalow/rapids/" title="Go to repository" class="md-source">
|
||
<div class="md-source__icon md-icon">
|
||
|
||
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05L244 40.45a28.87 28.87 0 00-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 01-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 000 40.81l195.61 195.6a28.86 28.86 0 0040.8 0l194.69-194.69a28.86 28.86 0 000-40.81z"/></svg>
|
||
</div>
|
||
<div class="md-source__repository">
|
||
carissalow/rapids
|
||
</div>
|
||
</a>
|
||
</div>
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||
|
||
<ul class="md-nav__list" data-md-scrollfix>
|
||
|
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|
||
|
||
|
||
|
||
|
||
<li class="md-nav__item">
|
||
<a href="../.." class="md-nav__link">
|
||
Home
|
||
</a>
|
||
</li>
|
||
|
||
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||
|
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||
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||
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||
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
|
||
|
||
|
||
<input class="md-nav__toggle md-toggle" data-md-toggle="nav-2" type="checkbox" id="nav-2" >
|
||
|
||
<label class="md-nav__link" for="nav-2">
|
||
Setup
|
||
<span class="md-nav__icon md-icon"></span>
|
||
</label>
|
||
<nav class="md-nav" aria-label="Setup" data-md-level="1">
|
||
<label class="md-nav__title" for="nav-2">
|
||
<span class="md-nav__icon md-icon"></span>
|
||
Setup
|
||
</label>
|
||
<ul class="md-nav__list" data-md-scrollfix>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<li class="md-nav__item">
|
||
<a href="../../file-structure/" class="md-nav__link">
|
||
File Structure
|
||
</a>
|
||
</li>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<li class="md-nav__item">
|
||
<a href="../../setup/installation/" class="md-nav__link">
|
||
Installation
|
||
</a>
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||
</li>
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||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<li class="md-nav__item">
|
||
<a href="../../setup/configuration/" class="md-nav__link">
|
||
Configuration
|
||
</a>
|
||
</li>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<li class="md-nav__item">
|
||
<a href="../../setup/execution/" class="md-nav__link">
|
||
Execution
|
||
</a>
|
||
</li>
|
||
|
||
|
||
</ul>
|
||
</nav>
|
||
</li>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
|
||
|
||
|
||
<input class="md-nav__toggle md-toggle" data-md-toggle="nav-3" type="checkbox" id="nav-3" >
|
||
|
||
<label class="md-nav__link" for="nav-3">
|
||
Example Workflows
|
||
<span class="md-nav__icon md-icon"></span>
|
||
</label>
|
||
<nav class="md-nav" aria-label="Example Workflows" data-md-level="1">
|
||
<label class="md-nav__title" for="nav-3">
|
||
<span class="md-nav__icon md-icon"></span>
|
||
Example Workflows
|
||
</label>
|
||
<ul class="md-nav__list" data-md-scrollfix>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<li class="md-nav__item">
|
||
<a href="../../workflow-examples/minimal/" class="md-nav__link">
|
||
Minimal
|
||
</a>
|
||
</li>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<li class="md-nav__item">
|
||
<a href="../../workflow-examples/analysis/" class="md-nav__link">
|
||
Analysis
|
||
</a>
|
||
</li>
|
||
|
||
|
||
</ul>
|
||
</nav>
|
||
</li>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
|
||
|
||
|
||
<input class="md-nav__toggle md-toggle" data-md-toggle="nav-4" type="checkbox" id="nav-4" >
|
||
|
||
<label class="md-nav__link" for="nav-4">
|
||
Behavioral Features
|
||
<span class="md-nav__icon md-icon"></span>
|
||
</label>
|
||
<nav class="md-nav" aria-label="Behavioral Features" data-md-level="1">
|
||
<label class="md-nav__title" for="nav-4">
|
||
<span class="md-nav__icon md-icon"></span>
|
||
Behavioral Features
|
||
</label>
|
||
<ul class="md-nav__list" data-md-scrollfix>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<li class="md-nav__item">
|
||
<a href="../../features/feature-introduction/" class="md-nav__link">
|
||
Introduction
|
||
</a>
|
||
</li>
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
|
||
<li class="md-nav__item md-nav__item--nested">
|
||
|
||
|
||
<input class="md-nav__toggle md-toggle" data-md-toggle="nav-4-2" type="checkbox" id="nav-4-2" >
|
||
|
||
<label class="md-nav__link" for="nav-4-2">
|
||
Phone
|
||
<span class="md-nav__icon md-icon"></span>
|
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<article class="md-content__inner md-typeset">
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<a href="https://github.com/carissalow/rapids/edit/master/docs/visualizations/feature-visualizations.md" title="Edit this page" class="md-content__button md-icon">
|
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20.71 7.04c.39-.39.39-1.04 0-1.41l-2.34-2.34c-.37-.39-1.02-.39-1.41 0l-1.84 1.83 3.75 3.75M3 17.25V21h3.75L17.81 9.93l-3.75-3.75L3 17.25z"/></svg>
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|
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<h1 id="feature-visualizations">Feature Visualizations<a class="headerlink" href="#feature-visualizations" title="Permanent link">¶</a></h1>
|
||
<h2 id="1-heatmap-correlation-matrix">1. Heatmap Correlation Matrix<a class="headerlink" href="#1-heatmap-correlation-matrix" title="Permanent link">¶</a></h2>
|
||
<p>Columns and rows are the behavioral features computed in RAPIDS, cells’ color represents the correlation coefficient between all days of data for every pair of features of all participants. </p>
|
||
<p>The user can specify a minimum number of observations (<a href="../../setup/configuration#time-segments">time segment</a> instances) required to compute the correlation between two features using the <code>MIN_ROWS_RATIO</code> parameter (0.5 by default) and the correlation method (Pearson, Spearman or Kendall) with the <code>CORR_METHOD</code> parameter. In addition, this plot can be configured to only display correlation coefficients above a threshold using the <code>CORR_THRESHOLD</code> parameter (0.1 by default).</p>
|
||
<div class="admonition example">
|
||
<p class="admonition-title">Example</p>
|
||
<p>Click <a href="../../img/hm-feature-correlations.html">here</a> to see an example of these interactive visualizations in HTML format</p>
|
||
</div>
|
||
<figure>
|
||
<img src="../../img/hm-feature-correlations.png" max-width="100%" />
|
||
<figcaption>Correlation matrix heatmap for all the features of all participants</figcaption>
|
||
</figure>
|
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