1493 lines
34 KiB
HTML
1493 lines
34 KiB
HTML
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<!doctype html>
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<html lang="en" class="no-js">
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<head>
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<meta charset="utf-8">
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<meta name="viewport" content="width=device-width,initial-scale=1">
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<link rel="shortcut icon" href="../img/logo.png">
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<meta name="generator" content="mkdocs-1.1.2, mkdocs-material-6.2.8+insiders-1.17.0">
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<title>Migrating from beta - RAPIDS</title>
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<link rel="stylesheet" href="../assets/stylesheets/main.10cb3b3f.min.css">
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<link rel="stylesheet" href="../assets/stylesheets/palette.697e47cb.min.css">
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<link rel="preconnect" href="https://fonts.gstatic.com" crossorigin>
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<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:300,400,400i,700%7CRoboto+Mono&display=fallback">
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<style>:root{--md-text-font-family:"Roboto",;--md-code-font-family:"Roboto Mono",}</style>
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<link rel="stylesheet" href="../stylesheets/extra.css">
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</head>
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<body dir="ltr" data-md-color-scheme="default" data-md-color-primary="blue" data-md-color-accent="blue">
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<script>var palette=JSON.parse(localStorage.getItem("__palette"));if(null!==palette&&"object"==typeof palette.color)for(var key in palette.color)document.body.setAttribute("data-md-color-"+key,palette.color[key])</script>
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<input class="md-toggle" data-md-toggle="drawer" type="checkbox" id="__drawer" autocomplete="off">
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<input class="md-toggle" data-md-toggle="search" type="checkbox" id="__search" autocomplete="off">
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<label class="md-overlay" for="__drawer"></label>
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<div data-md-component="skip">
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<a href="#migrating-from-rapids-beta" class="md-skip">
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Skip to content
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</a>
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</div>
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<div data-md-component="announce">
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</div>
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<header class="md-header" data-md-component="header">
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<nav class="md-header__inner md-grid" aria-label="Header">
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<a href=".." title="RAPIDS" class="md-header__button md-logo" aria-label="RAPIDS">
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<img src="../img/logo.png" alt="logo">
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</a>
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<label class="md-header__button md-icon" for="__drawer">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M3 6h18v2H3V6m0 5h18v2H3v-2m0 5h18v2H3v-2z"/></svg>
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</label>
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<div class="md-header__title" data-md-component="header-title">
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<div class="md-header__ellipsis">
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<div class="md-header__topic">
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<span class="md-ellipsis">
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RAPIDS
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</span>
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</div>
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<div class="md-header__topic" data-md-component="header-topic">
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<span class="md-ellipsis">
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Migrating from beta
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</span>
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</div>
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</div>
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</div>
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<div class="md-header__options">
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<button class="md-header__button md-icon" title="Switch to light mode" aria-label="Switch to light mode" data-md-option="palette" data-md-color-scheme="default" data-md-color-primary="blue" data-md-color-accent="blue" data-md-state="hidden">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M17 7H7a5 5 0 00-5 5 5 5 0 005 5h10a5 5 0 005-5 5 5 0 00-5-5m0 8a3 3 0 01-3-3 3 3 0 013-3 3 3 0 013 3 3 3 0 01-3 3z"/></svg>
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</button>
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<button class="md-header__button md-icon" title="Switch to dark mode" aria-label="Switch to dark mode" data-md-option="palette" data-md-color-scheme="slate" data-md-color-primary="blue" data-md-color-accent="blue" data-md-state="hidden">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M7 10a2 2 0 012 2 2 2 0 01-2 2 2 2 0 01-2-2 2 2 0 012-2m10-3a5 5 0 015 5 5 5 0 01-5 5H7a5 5 0 01-5-5 5 5 0 015-5h10M7 9a3 3 0 00-3 3 3 3 0 003 3h10a3 3 0 003-3 3 3 0 00-3-3H7z"/></svg>
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</button>
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</div>
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<label class="md-header__button md-icon" for="__search">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0116 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 019.5 16 6.5 6.5 0 013 9.5 6.5 6.5 0 019.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5z"/></svg>
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</label>
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<div class="md-search" data-md-component="search" role="dialog">
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<label class="md-search__overlay" for="__search"></label>
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<div class="md-search__inner" role="search">
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<form class="md-search__form" name="search">
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<input type="text" class="md-search__input" name="query" aria-label="Search" placeholder="Search" autocapitalize="off" autocorrect="off" autocomplete="off" spellcheck="false" data-md-component="search-query" data-md-state="active" required>
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<label class="md-search__icon md-icon" for="__search">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0116 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 019.5 16 6.5 6.5 0 013 9.5 6.5 6.5 0 019.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5z"/></svg>
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11h12z"/></svg>
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</label>
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<nav class="md-search__options" aria-label="Search">
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<button type="reset" class="md-search__icon md-icon" aria-label="Clear" data-md-component="search-reset" tabindex="-1">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41L17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41z"/></svg>
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</button>
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</nav>
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<div class="md-search__suggest" data-md-component="search-suggest"></div>
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</form>
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<div class="md-search__output">
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<div class="md-search__scrollwrap" data-md-scrollfix>
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<div class="md-search-result" data-md-component="search-result">
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<div class="md-search-result__meta">
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Initializing search
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</div>
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<ol class="md-search-result__list"></ol>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div class="md-header__source">
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<a href="https://github.com/carissalow/rapids/" title="Go to repository" class="md-source">
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<div class="md-source__icon md-icon">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05L244 40.45a28.87 28.87 0 00-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 01-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 000 40.81l195.61 195.6a28.86 28.86 0 0040.8 0l194.69-194.69a28.86 28.86 0 000-40.81z"/></svg>
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</div>
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<div class="md-source__repository">
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carissalow/rapids
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</div>
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</a>
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</div>
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</nav>
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</header>
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<div class="md-container" data-md-component="container">
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<main class="md-main" data-md-component="main">
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<div class="md-main__inner md-grid">
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<div class="md-sidebar md-sidebar--primary" data-md-component="navigation" >
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<div class="md-sidebar__scrollwrap">
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<div class="md-sidebar__inner">
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<nav class="md-nav md-nav--primary" aria-label="Navigation" data-md-level="0">
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<label class="md-nav__title" for="__drawer">
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<a href=".." title="RAPIDS" class="md-nav__button md-logo" aria-label="RAPIDS">
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<img src="../img/logo.png" alt="logo">
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</a>
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RAPIDS
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</label>
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<div class="md-nav__source">
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<a href="https://github.com/carissalow/rapids/" title="Go to repository" class="md-source">
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<div class="md-source__icon md-icon">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05L244 40.45a28.87 28.87 0 00-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 01-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 000 40.81l195.61 195.6a28.86 28.86 0 0040.8 0l194.69-194.69a28.86 28.86 0 000-40.81z"/></svg>
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</div>
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<div class="md-source__repository">
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carissalow/rapids
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</div>
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</a>
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</div>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href=".." class="md-nav__link">
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Home
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</a>
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</li>
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="nav-2" type="checkbox" id="nav-2" >
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<label class="md-nav__link" for="nav-2">
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Setup
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Setup" data-md-level="1">
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<label class="md-nav__title" for="nav-2">
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<span class="md-nav__icon md-icon"></span>
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Setup
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../file-structure/" class="md-nav__link">
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File Structure
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../setup/installation/" class="md-nav__link">
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Installation
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../setup/configuration/" class="md-nav__link">
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Configuration
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../setup/execution/" class="md-nav__link">
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Execution
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../citation/" class="md-nav__link">
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Citation
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</a>
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</li>
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</ul>
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="nav-3" type="checkbox" id="nav-3" >
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<label class="md-nav__link" for="nav-3">
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Example Workflows
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Example Workflows" data-md-level="1">
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<label class="md-nav__title" for="nav-3">
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<span class="md-nav__icon md-icon"></span>
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Example Workflows
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../workflow-examples/minimal/" class="md-nav__link">
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Minimal
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../workflow-examples/analysis/" class="md-nav__link">
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Analysis
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</a>
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</li>
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</ul>
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="nav-4" type="checkbox" id="nav-4" >
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<label class="md-nav__link" for="nav-4">
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Behavioral Features
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Behavioral Features" data-md-level="1">
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<label class="md-nav__title" for="nav-4">
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<span class="md-nav__icon md-icon"></span>
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Behavioral Features
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../features/feature-introduction/" class="md-nav__link">
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Introduction
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</a>
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</li>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="nav-4-2" type="checkbox" id="nav-4-2" >
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<label class="md-nav__link" for="nav-4-2">
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Phone
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Phone" data-md-level="2">
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<label class="md-nav__title" for="nav-4-2">
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<span class="md-nav__icon md-icon"></span>
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Phone
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../features/phone-accelerometer/" class="md-nav__link">
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Phone Accelerometer
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-activity-recognition/" class="md-nav__link">
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Phone Activity Recognition
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-applications-crashes/" class="md-nav__link">
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Phone Applications Crashes
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-applications-foreground/" class="md-nav__link">
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Phone Applications Foreground
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-applications-notifications/" class="md-nav__link">
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Phone Applications Notifications
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-aware-log/" class="md-nav__link">
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Phone Aware Log
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-battery/" class="md-nav__link">
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Phone Battery
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-bluetooth/" class="md-nav__link">
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Phone Bluetooth
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-calls/" class="md-nav__link">
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Phone Calls
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-conversation/" class="md-nav__link">
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Phone Conversation
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-data-yield/" class="md-nav__link">
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Phone Data Yield
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-keyboard/" class="md-nav__link">
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Phone Keyboard
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-light/" class="md-nav__link">
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Phone Light
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-locations/" class="md-nav__link">
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Phone Locations
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-messages/" class="md-nav__link">
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Phone Messages
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-screen/" class="md-nav__link">
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Phone Screen
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-wifi-connected/" class="md-nav__link">
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Phone WiFI Connected
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/phone-wifi-visible/" class="md-nav__link">
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Phone WiFI Visible
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</a>
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</ul>
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</nav>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="nav-4-3" type="checkbox" id="nav-4-3" >
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<label class="md-nav__link" for="nav-4-3">
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Fitbit
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Fitbit" data-md-level="2">
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<label class="md-nav__title" for="nav-4-3">
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<span class="md-nav__icon md-icon"></span>
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Fitbit
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../features/fitbit-data-yield/" class="md-nav__link">
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Fitbit Data Yield
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/fitbit-heartrate-summary/" class="md-nav__link">
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Fitbit Heart Rate Summary
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/fitbit-heartrate-intraday/" class="md-nav__link">
|
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Fitbit Heart Rate Intraday
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../features/fitbit-sleep-summary/" class="md-nav__link">
|
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Fitbit Sleep Summary
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</a>
|
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</li>
|
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<li class="md-nav__item">
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<a href="../features/fitbit-steps-summary/" class="md-nav__link">
|
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Fitbit Steps Summary
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</a>
|
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</li>
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<li class="md-nav__item">
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<a href="../features/fitbit-steps-intraday/" class="md-nav__link">
|
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Fitbit Steps Intraday
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</a>
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</li>
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</ul>
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</nav>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="nav-4-4" type="checkbox" id="nav-4-4" >
|
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<label class="md-nav__link" for="nav-4-4">
|
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Empatica
|
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<span class="md-nav__icon md-icon"></span>
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</label>
|
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|
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<nav class="md-nav" aria-label="Empatica" data-md-level="2">
|
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<label class="md-nav__title" for="nav-4-4">
|
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<span class="md-nav__icon md-icon"></span>
|
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Empatica
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
|
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<a href="../features/empatica-accelerometer/" class="md-nav__link">
|
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Empatica Accelerometer
|
|
</a>
|
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</li>
|
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<li class="md-nav__item">
|
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<a href="../features/empatica-heartrate/" class="md-nav__link">
|
|
Empatica Heart Rate
|
|
</a>
|
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</li>
|
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<li class="md-nav__item">
|
|
<a href="../features/empatica-temperature/" class="md-nav__link">
|
|
Empatica Temperature
|
|
</a>
|
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</li>
|
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<li class="md-nav__item">
|
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<a href="../features/empatica-electrodermal-activity/" class="md-nav__link">
|
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Empatica Electrodermal Activity
|
|
</a>
|
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</li>
|
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<li class="md-nav__item">
|
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<a href="../features/empatica-blood-volume-pulse/" class="md-nav__link">
|
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Empatica Blood Volume Pulse
|
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</a>
|
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</li>
|
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<li class="md-nav__item">
|
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<a href="../features/empatica-inter-beat-interval/" class="md-nav__link">
|
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Empatica Inter Beat Interval
|
|
</a>
|
|
</li>
|
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<li class="md-nav__item">
|
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<a href="../features/empatica-tags/" class="md-nav__link">
|
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Empatica Tags
|
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</a>
|
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</li>
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</ul>
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</nav>
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<li class="md-nav__item">
|
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<a href="../features/add-new-features/" class="md-nav__link">
|
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Add New Features
|
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</a>
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</li>
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</ul>
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</nav>
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="nav-5" type="checkbox" id="nav-5" >
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<label class="md-nav__link" for="nav-5">
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Visualizations
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<span class="md-nav__icon md-icon"></span>
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<nav class="md-nav" aria-label="Visualizations" data-md-level="1">
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<label class="md-nav__title" for="nav-5">
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<span class="md-nav__icon md-icon"></span>
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Visualizations
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<li class="md-nav__item">
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<a href="../visualizations/data-quality-visualizations/" class="md-nav__link">
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Data Quality
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</a>
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<li class="md-nav__item">
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<a href="../visualizations/feature-visualizations/" class="md-nav__link">
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Features
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</nav>
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<label class="md-nav__link" for="nav-6">
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Developers
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<nav class="md-nav" aria-label="Developers" data-md-level="1">
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Developers
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../developers/git-flow/" class="md-nav__link">
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Git Flow
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<li class="md-nav__item">
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<a href="../developers/remote-support/" class="md-nav__link">
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Remote Support
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<li class="md-nav__item">
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<a href="../developers/virtual-environments/" class="md-nav__link">
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Virtual Environments
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<li class="md-nav__item">
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Documentation
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<li class="md-nav__item">
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<a href="../developers/testing/" class="md-nav__link">
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Testing
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<li class="md-nav__item">
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Test cases
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<li class="md-nav__item">
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<a href="../developers/validation-schema-config/" class="md-nav__link">
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Validation schema of config.yaml
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</ul>
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</nav>
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<li class="md-nav__item md-nav__item--active md-nav__item--section md-nav__item--nested">
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<label class="md-nav__link" for="nav-7">
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Others
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<nav class="md-nav" aria-label="Others" data-md-level="1">
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Others
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<li class="md-nav__item md-nav__item--active">
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<input class="md-nav__toggle md-toggle" data-md-toggle="toc" type="checkbox" id="__toc">
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<a href="./" class="md-nav__link md-nav__link--active">
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Migrating from beta
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</a>
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<li class="md-nav__item">
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<a href="../code_of_conduct/" class="md-nav__link">
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Code of Conduct
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<li class="md-nav__item">
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<a href="../faq/" class="md-nav__link">
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FAQ
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<li class="md-nav__item">
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<a href="../team/" class="md-nav__link">
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Team
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<li class="md-nav__item">
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<a href="../change-log/" class="md-nav__link">
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Change Log
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<div class="md-sidebar md-sidebar--secondary" data-md-component="toc" >
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<nav class="md-nav md-nav--secondary" aria-label="Table of contents">
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<div class="md-content">
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<article class="md-content__inner md-typeset">
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<a href="https://github.com/carissalow/rapids/edit/master/docs/migrating-from-old-versions.md" title="Edit this page" class="md-content__button md-icon">
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<h1 id="migrating-from-rapids-beta">Migrating from RAPIDS beta<a class="headerlink" href="#migrating-from-rapids-beta" title="Permanent link">¶</a></h1>
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<p>If you were relying on the <a href="https://rapidspitt.readthedocs.io/en/latest/">old docs</a> and the most recent version of RAPIDS you are working with is from or before <a href="https://github.com/carissalow/rapids/commit/640890c7b49492d150accff5c87b1eb25bd97a49">Oct 13, 2020</a> you are using the beta version of RAPIDS.</p>
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<p>You can start using the new RAPIDS (we are starting with <code>v0.1.0</code>) right away, just take into account the following:</p>
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<ol>
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<li><a href="../setup/installation/">Install</a> a new copy of RAPIDS (the R and Python virtual environments didn’t change so the cached versions will be reused)<ol>
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<li>Make sure you don’t skip a new Installation step to give execution permissions to the RAPIDS script: <code>chmod +x rapids</code></li>
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</ol>
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</li>
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<li>Follow the new <a href="../setup/configuration/">Configuration</a> guide.<ol>
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<li>You can copy and paste your old <code>.env</code> file</li>
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<li>You can migrate your old participant files:
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<div class="highlight"><pre><span></span><code>python tools/update_format_participant_files.py
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</code></pre></div></li>
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</ol>
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</li>
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<li>Get familiar with the new way of <a href="../setup/execution/">Executing</a> RAPIDS</li>
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<li>You can proceed to reconfigure your <code>config.yaml</code>, its structure is more consistent and should be familiar to you.</li>
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</ol>
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<div class="admonition info">
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<p class="admonition-title">Info</p>
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<p>If you have any questions reach out to us on <a href="http://awareframework.com:3000/">Slack</a>.</p>
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