57 lines
2.8 KiB
Python
57 lines
2.8 KiB
Python
configfile: "config.yaml"
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include: "rules/preprocessing.snakefile"
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include: "rules/features.snakefile"
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include: "rules/reports.snakefile"
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rule all:
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input:
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expand("data/raw/{pid}/{sensor}_raw.csv", pid=config["PIDS"], sensor=config["SENSORS"]),
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expand("data/raw/{pid}/{sensor}_with_datetime.csv", pid=config["PIDS"], sensor=config["SENSORS"]),
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expand("data/processed/{pid}/battery_deltas.csv", pid=config["PIDS"]),
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expand("data/interim/{pid}/phone_valid_sensed_days.csv", pid=config["PIDS"]),
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expand("data/processed/{pid}/com_sms_{sms_type}_{day_segment}_{metric}.csv",
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pid=config["PIDS"],
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sms_type = config["COM_SMS"]["SMS_TYPES"],
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day_segment = config["COM_SMS"]["DAY_SEGMENTS"],
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metric = config["COM_SMS"]["METRICS"]),
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expand("data/processed/{pid}/com_call_{call_type}_{segment}_{metric}.csv",
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pid=config["PIDS"],
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call_type = config["COM_CALL"]["CALL_TYPE_MISSED"],
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segment = config["COM_CALL"]["DAY_SEGMENTS"],
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metric = config["COM_CALL"]["METRICS_MISSED"]),
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expand("data/processed/{pid}/com_call_{call_type}_{segment}_{metric}.csv",
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pid=config["PIDS"],
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call_type = config["COM_CALL"]["CALL_TYPE_TAKEN"],
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segment = config["COM_CALL"]["DAY_SEGMENTS"],
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metric = config["COM_CALL"]["METRICS_TAKEN"]),
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expand("data/processed/{pid}/location_barnett.csv", pid=config["PIDS"]),
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expand("data/processed/{pid}/bluetooth_{segment}.csv",
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pid=config["PIDS"],
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segment = config["BLUETOOTH"]["DAY_SEGMENTS"]),
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expand("data/processed/{pid}/activity_extracted.csv",pid=config["PIDS"]),
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# Reports
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expand("reports/figures/{pid}/{sensor}_heatmap_rows.html", pid=config["PIDS"], sensor=config["SENSORS"]),
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expand("reports/figures/{pid}/compliance_heatmap.html", pid=config["PIDS"], sensor=config["SENSORS"]),
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# --- Packrat Rules --- #
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## Taken from https://github.com/lachlandeer/snakemake-econ-r
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## packrat_install: installs packrat onto machine
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rule packrat_install:
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shell:
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"R -e 'install.packages(\"packrat\", repos=\"http://cran.us.r-project.org\")'"
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## packrat_install: initialize a packrat environment for this project
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rule packrat_init:
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shell:
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"R -e 'packrat::init()'"
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## packrat_snap : Look for new R packages in files & archives them
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rule packrat_snap:
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shell:
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"R -e 'packrat::snapshot()'"
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## packrat_restore: Installs archived packages onto a new machine
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rule packrat_restore:
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shell:
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"R -e 'packrat::restore()'" |