22 lines
812 B
Plaintext
22 lines
812 B
Plaintext
rule days_to_analyse:
|
|
input:
|
|
participant_info = "data/raw/{pid}/" + config["METRICS_FOR_ANALYSIS"]["GROUNDTRUTH_TABLE"] + "_raw.csv"
|
|
params:
|
|
days_before_surgery = "{days_before_surgery}",
|
|
days_in_hospital = "{days_in_hospital}",
|
|
days_after_discharge= "{days_after_discharge}"
|
|
output:
|
|
"data/interim/{pid}/days_to_analyse_{days_before_surgery}_{days_in_hospital}_{days_after_discharge}.csv"
|
|
script:
|
|
"../src/models/select_days_to_analyse.py"
|
|
|
|
rule get_targets:
|
|
input:
|
|
participant_info = "data/raw/{pid}/" + config["METRICS_FOR_ANALYSIS"]["GROUNDTRUTH_TABLE"] + "_raw.csv"
|
|
params:
|
|
summarised = "{summarised}"
|
|
output:
|
|
"data/processed/{pid}/targets_{summarised}.csv"
|
|
script:
|
|
"../src/models/get_targets.py"
|