33 lines
1.8 KiB
Python
33 lines
1.8 KiB
Python
# Features.smk #########################################################################################################
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def find_features_files(wildcards):
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feature_files = []
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for provider_key, provider in config[(wildcards.sensor_key).upper()]["PROVIDERS"].items():
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if provider["COMPUTE"]:
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feature_files.extend(expand("data/interim/{{pid}}/{sensor_key}_features/{sensor_key}_{language}_{provider_key}.csv", sensor_key=wildcards.sensor_key.lower(), language=provider["SRC_LANGUAGE"].lower(), provider_key=provider_key.lower()))
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return(feature_files)
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def optional_steps_sleep_input(wildcards):
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if config["STEP"]["EXCLUDE_SLEEP"]["EXCLUDE"] == True and config["STEP"]["EXCLUDE_SLEEP"]["TYPE"] == "FITBIT_BASED":
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return "data/raw/{pid}/fitbit_sleep_summary_with_datetime.csv"
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else:
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return []
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def input_merge_sensor_features_for_individual_participants(wildcards):
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feature_files = []
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for config_key in config.keys():
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if config_key.startswith(("PHONE", "FITBIT", "EMPATICA")) and "PROVIDERS" in config[config_key] and isinstance(config[config_key]["PROVIDERS"], dict):
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for provider_key, provider in config[config_key]["PROVIDERS"].items():
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if "COMPUTE" in provider.keys() and provider["COMPUTE"]:
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feature_files.append("data/processed/features/{pid}/" + config_key.lower() + ".csv")
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break
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return feature_files
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def get_phone_sensor_names():
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phone_sensor_names = []
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for config_key in config.keys():
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if config_key.startswith(("PHONE")) and "PROVIDERS" in config[config_key]:
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if config_key != "PHONE_DATA_YIELD" and config_key not in phone_sensor_names:
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phone_sensor_names.append(config_key)
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return phone_sensor_names
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