20 lines
989 B
Python
20 lines
989 B
Python
configfile: "config.yaml"
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include: "../rules/packrat.snakefile"
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include: "../rules/preprocessing.snakefile"
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include: "../rules/features.snakefile"
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include: "../rules/models.snakefile"
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include: "../rules/reports.snakefile"
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include: "../rules/mystudy.snakefile" # You can add snakfiles with rules tailored to your project
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rule all:
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input:
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expand("data/raw/{pid}/{sensor}_raw.csv", pid=config["PIDS"], sensor=config["SENSORS"]),
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expand("data/raw/{pid}/{sensor}_with_datetime.csv", pid=config["PIDS"], sensor=config["SENSORS"]),
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expand("data/processed/{pid}/sms_{sms_type}_{day_segment}.csv",
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pid=config["PIDS"],
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sms_type = config["SMS"]["TYPES"],
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day_segment = config["SMS"]["DAY_SEGMENTS"]),
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rule clean:
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shell:
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"rm -rf data/raw/* && rm -rf data/interim/* && rm -rf data/processed/* && rm -rf reports/figures/* && rm -rf reports/*.zip && rm -rf reports/compliance/*" |