54 lines
2.3 KiB
Docker
54 lines
2.3 KiB
Docker
# getting base image ubuntu
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FROM ubuntu:20.04
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ENV DEBIAN_FRONTEND=noninteractive
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RUN apt update && apt install -y \
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libcurl4-openssl-dev \
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libssl-dev \
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libxml2-dev \
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libmysqlclient-dev \
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mysql-server
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RUN apt-get update && apt-get install -y gnupg
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RUN apt-get update && apt-get install -y software-properties-common
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RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
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RUN add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/'
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RUN apt update && apt install -y r-base
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RUN apt install -y pandoc
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RUN apt install -y git
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RUN apt-get update && apt-get install -y vim
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RUN apt-get update && apt-get install -y nano
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RUN apt update && apt install -y unzip
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ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
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ENV PATH /opt/conda/bin:$PATH
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RUN apt-get update --fix-missing && \
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apt-get install -y wget bzip2 ca-certificates curl git && \
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apt-get clean && \
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rm -rf /var/lib/apt/lists/*
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RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.5.11-Linux-x86_64.sh -O ~/miniconda.sh && \
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/bin/bash ~/miniconda.sh -b -p /opt/conda && \
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rm ~/miniconda.sh && \
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/opt/conda/bin/conda clean -tipsy && \
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ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
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echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
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echo "conda activate base" >> ~/.bashrc
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ENV TINI_VERSION v0.16.1
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ADD https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini /usr/bin/tini
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RUN chmod +x /usr/bin/tini
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RUN git clone https://github.com/carissalow/rapids
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ENTRYPOINT [ "/usr/bin/tini", "--" ]
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CMD [ "/bin/bash" ]
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RUN conda update -n base -c defaults conda
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WORKDIR /rapids
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RUN conda env create -f environment.yml -n rapids
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RUN Rscript --vanilla -e 'install.packages("rmarkdown", repos="http://cran.us.r-project.org")'
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RUN R -e 'renv::restore(repos = c(CRAN = "https://packagemanager.rstudio.com/all/__linux__/focal/latest"))'
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ADD https://osf.io/587wc/download data/external
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RUN mv data/external/download data/external/rapids_example.sql.zip
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RUN unzip data/external/rapids_example.sql.zip
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RUN cp rapids_example.sql data/external/rapids_example.sql
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RUN rm data/external/rapids_example.sql.zip
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RUN rm rapids_example.sql
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RUN echo "source activate rapids" > ~/.bashrc
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ENV PATH /opt/conda/envs/rapids/bin:$PATH |