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RAPIDS provider
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<a href="https://github.com/carissalow/rapids/edit/master/docs/features/fitbit-heartrate-summary.md" title="Edit this page" class="md-content__button md-icon">
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<h1 id="fitbit-heart-rate-summary">Fitbit Heart Rate Summary<a class="headerlink" href="#fitbit-heart-rate-summary" title="Permanent link">&para;</a></h1>
<p>Sensor parameters description for <code>[FITBIT_HEARTRATE_SUMMARY]</code>:</p>
<table>
<thead>
<tr>
<th>Key&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</th>
<th>Description</th>
</tr>
</thead>
<tbody>
<tr>
<td><code>[TABLE]</code></td>
<td>Database table name or file path where the heart rate summary data is stored. The configuration keys in <a href="../../setup/configuration/#device-data-source-configuration">Device Data Source Configuration</a> control whether this parameter is interpreted as table or file.</td>
</tr>
</tbody>
</table>
<p>The format of the column(s) containing the Fitbit sensor data can be <code>JSON</code> or <code>PLAIN_TEXT</code>. The data in <code>JSON</code> format is obtained directly from the Fitbit API. We support <code>PLAIN_TEXT</code> in case you already parsed your data and don&rsquo;t have access to your participants&rsquo; Fitbit accounts anymore. If your data is in <code>JSON</code> format then summary and intraday data come packed together. </p>
<p>We provide examples of the input format that RAPIDS expects, note that both examples for <code>JSON</code> and <code>PLAIN_TEXT</code> are tabular and the actual format difference comes in the <code>fitbit_data</code> column (we truncate the <code>JSON</code> example for brevity).</p>
<details class="example"><summary>Example of the structure of source data</summary><div class="tabbed-set" data-tabs="1:2"><input checked="checked" id="__tabbed_1_1" name="__tabbed_1" type="radio" /><label for="__tabbed_1_1">JSON</label><div class="tabbed-content">
<table>
<thead>
<tr>
<th>device_id</th>
<th>fitbit_data</th>
</tr>
</thead>
<tbody>
<tr>
<td>a748ee1a-1d0b-4ae9-9074-279a2b6ba524</td>
<td>{&ldquo;activities-heart&rdquo;:[{&ldquo;dateTime&rdquo;:&rdquo;2020-10-07&rdquo;,&rdquo;value&rdquo;:{&ldquo;customHeartRateZones&rdquo;:[],&rdquo;heartRateZones&rdquo;:[{&ldquo;caloriesOut&rdquo;:1200.6102,&rdquo;max&rdquo;:88,&rdquo;min&rdquo;:31,&rdquo;minutes&rdquo;:1058,&rdquo;name&rdquo;:&rdquo;Out of Range&rdquo;},{&ldquo;caloriesOut&rdquo;:760.3020,&rdquo;max&rdquo;:120,&rdquo;min&rdquo;:86,&rdquo;minutes&rdquo;:366,&rdquo;name&rdquo;:&rdquo;Fat Burn&rdquo;},{&ldquo;caloriesOut&rdquo;:15.2048,&rdquo;max&rdquo;:146,&rdquo;min&rdquo;:120,&rdquo;minutes&rdquo;:2,&rdquo;name&rdquo;:&rdquo;Cardio&rdquo;},{&ldquo;caloriesOut&rdquo;:0,&rdquo;max&rdquo;:221,&rdquo;min&rdquo;:148,&rdquo;minutes&rdquo;:0,&rdquo;name&rdquo;:&rdquo;Peak&rdquo;}],&rdquo;restingHeartRate&rdquo;:72}}],&rdquo;activities-heart-intraday&rdquo;:{&ldquo;dataset&rdquo;:[{&ldquo;time&rdquo;:&rdquo;00:00:00&rdquo;,&rdquo;value&rdquo;:68},{&ldquo;time&rdquo;:&rdquo;00:01:00&rdquo;,&rdquo;value&rdquo;:67},{&ldquo;time&rdquo;:&rdquo;00:02:00&rdquo;,&rdquo;value&rdquo;:67},&hellip;],&rdquo;datasetInterval&rdquo;:1,&rdquo;datasetType&rdquo;:&rdquo;minute&rdquo;}}</td>
</tr>
<tr>
<td>a748ee1a-1d0b-4ae9-9074-279a2b6ba524</td>
<td>{&ldquo;activities-heart&rdquo;:[{&ldquo;dateTime&rdquo;:&rdquo;2020-10-08&rdquo;,&rdquo;value&rdquo;:{&ldquo;customHeartRateZones&rdquo;:[],&rdquo;heartRateZones&rdquo;:[{&ldquo;caloriesOut&rdquo;:1100.1120,&rdquo;max&rdquo;:89,&rdquo;min&rdquo;:30,&rdquo;minutes&rdquo;:921,&rdquo;name&rdquo;:&rdquo;Out of Range&rdquo;},{&ldquo;caloriesOut&rdquo;:660.0012,&rdquo;max&rdquo;:118,&rdquo;min&rdquo;:82,&rdquo;minutes&rdquo;:361,&rdquo;name&rdquo;:&rdquo;Fat Burn&rdquo;},{&ldquo;caloriesOut&rdquo;:23.7088,&rdquo;max&rdquo;:142,&rdquo;min&rdquo;:108,&rdquo;minutes&rdquo;:3,&rdquo;name&rdquo;:&rdquo;Cardio&rdquo;},{&ldquo;caloriesOut&rdquo;:0,&rdquo;max&rdquo;:221,&rdquo;min&rdquo;:148,&rdquo;minutes&rdquo;:0,&rdquo;name&rdquo;:&rdquo;Peak&rdquo;}],&rdquo;restingHeartRate&rdquo;:70}}],&rdquo;activities-heart-intraday&rdquo;:{&ldquo;dataset&rdquo;:[{&ldquo;time&rdquo;:&rdquo;00:00:00&rdquo;,&rdquo;value&rdquo;:77},{&ldquo;time&rdquo;:&rdquo;00:01:00&rdquo;,&rdquo;value&rdquo;:75},{&ldquo;time&rdquo;:&rdquo;00:02:00&rdquo;,&rdquo;value&rdquo;:73},&hellip;],&rdquo;datasetInterval&rdquo;:1,&rdquo;datasetType&rdquo;:&rdquo;minute&rdquo;}}</td>
</tr>
<tr>
<td>a748ee1a-1d0b-4ae9-9074-279a2b6ba524</td>
<td>{&ldquo;activities-heart&rdquo;:[{&ldquo;dateTime&rdquo;:&rdquo;2020-10-09&rdquo;,&rdquo;value&rdquo;:{&ldquo;customHeartRateZones&rdquo;:[],&rdquo;heartRateZones&rdquo;:[{&ldquo;caloriesOut&rdquo;:750.3615,&rdquo;max&rdquo;:77,&rdquo;min&rdquo;:30,&rdquo;minutes&rdquo;:851,&rdquo;name&rdquo;:&rdquo;Out of Range&rdquo;},{&ldquo;caloriesOut&rdquo;:734.1516,&rdquo;max&rdquo;:107,&rdquo;min&rdquo;:77,&rdquo;minutes&rdquo;:550,&rdquo;name&rdquo;:&rdquo;Fat Burn&rdquo;},{&ldquo;caloriesOut&rdquo;:131.8579,&rdquo;max&rdquo;:130,&rdquo;min&rdquo;:107,&rdquo;minutes&rdquo;:29,&rdquo;name&rdquo;:&rdquo;Cardio&rdquo;},{&ldquo;caloriesOut&rdquo;:0,&rdquo;max&rdquo;:220,&rdquo;min&rdquo;:130,&rdquo;minutes&rdquo;:0,&rdquo;name&rdquo;:&rdquo;Peak&rdquo;}],&rdquo;restingHeartRate&rdquo;:69}}],&rdquo;activities-heart-intraday&rdquo;:{&ldquo;dataset&rdquo;:[{&ldquo;time&rdquo;:&rdquo;00:00:00&rdquo;,&rdquo;value&rdquo;:90},{&ldquo;time&rdquo;:&rdquo;00:01:00&rdquo;,&rdquo;value&rdquo;:89},{&ldquo;time&rdquo;:&rdquo;00:02:00&rdquo;,&rdquo;value&rdquo;:88},&hellip;],&rdquo;datasetInterval&rdquo;:1,&rdquo;datasetType&rdquo;:&rdquo;minute&rdquo;}}</td>
</tr>
</tbody>
</table>
</div>
<input id="__tabbed_1_2" name="__tabbed_1" type="radio" /><label for="__tabbed_1_2">PLAIN_TEXT</label><div class="tabbed-content">
<table>
<thead>
<tr>
<th>device_id</th>
<th>local_date_time</th>
<th>heartrate_daily_restinghr</th>
<th>heartrate_daily_caloriesoutofrange</th>
<th>heartrate_daily_caloriesfatburn</th>
<th>heartrate_daily_caloriescardio</th>
<th>heartrate_daily_caloriespeak</th>
</tr>
</thead>
<tbody>
<tr>
<td>a748ee1a-1d0b-4ae9-9074-279a2b6ba524</td>
<td>2020-10-07</td>
<td>72</td>
<td>1200.6102</td>
<td>760.3020</td>
<td>15.2048</td>
<td>0</td>
</tr>
<tr>
<td>a748ee1a-1d0b-4ae9-9074-279a2b6ba524</td>
<td>2020-10-08</td>
<td>70</td>
<td>1100.1120</td>
<td>660.0012</td>
<td>23.7088</td>
<td>0</td>
</tr>
<tr>
<td>a748ee1a-1d0b-4ae9-9074-279a2b6ba524</td>
<td>2020-10-09</td>
<td>69</td>
<td>750.3615</td>
<td>734.1516</td>
<td>131.8579</td>
<td>0</td>
</tr>
</tbody>
</table>
</div>
</div>
</details>
<h2 id="rapids-provider">RAPIDS provider<a class="headerlink" href="#rapids-provider" title="Permanent link">&para;</a></h2>
<div class="admonition info">
<p class="admonition-title">Available day segments</p>
<ul>
<li>Only available for segments that span 1 or more complete days (e.g. Jan 1<sup>st</sup> 00:00 to Jan 3<sup>rd</sup> 23:59)</li>
</ul>
</div>
<div class="admonition info">
<p class="admonition-title">File Sequence</p>
<div class="highlight"><pre><span></span><code>- data/raw/<span class="o">{</span>pid<span class="o">}</span>/fitbit_heartrate_summary_raw.csv
- data/raw/<span class="o">{</span>pid<span class="o">}</span>/fitbit_heartrate_summary_parsed.csv
- data/raw/<span class="o">{</span>pid<span class="o">}</span>/fitbit_heartrate_summary_parsed_with_datetime.csv
- data/interim/<span class="o">{</span>pid<span class="o">}</span>/fitbit_heartrate_summary_features/fitbit_heartrate_summary_<span class="o">{</span>language<span class="o">}</span>_<span class="o">{</span>provider_key<span class="o">}</span>.csv
- data/processed/features/<span class="o">{</span>pid<span class="o">}</span>/fitbit_heartrate_summary.csv
</code></pre></div>
</div>
<p>Parameters description for <code>[FITBIT_HEARTRATE_SUMMARY][PROVIDERS][RAPIDS]</code>:</p>
<table>
<thead>
<tr>
<th>Key&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</th>
<th>Description</th>
</tr>
</thead>
<tbody>
<tr>
<td><code>[COMPUTE]</code></td>
<td>Set to <code>True</code> to extract <code>FITBIT_HEARTRATE_SUMMARY</code> features from the <code>RAPIDS</code> provider</td>
</tr>
<tr>
<td><code>[FEATURES]</code></td>
<td>Features to be computed from heart rate summary data, see table below</td>
</tr>
</tbody>
</table>
<p>Features description for <code>[FITBIT_HEARTRATE_SUMMARY][PROVIDERS][RAPIDS]</code>:</p>
<table>
<thead>
<tr>
<th>Feature</th>
<th>Units</th>
<th>Description</th>
</tr>
</thead>
<tbody>
<tr>
<td>maxrestinghr</td>
<td>beats/mins</td>
<td>The maximum daily resting heart rate during a day segment.</td>
</tr>
<tr>
<td>minrestinghr</td>
<td>beats/mins</td>
<td>The minimum daily resting heart rate during a day segment.</td>
</tr>
<tr>
<td>avgrestinghr</td>
<td>beats/mins</td>
<td>The average daily resting heart rate during a day segment.</td>
</tr>
<tr>
<td>medianrestinghr</td>
<td>beats/mins</td>
<td>The median of daily resting heart rate during a day segment.</td>
</tr>
<tr>
<td>moderestinghr</td>
<td>beats/mins</td>
<td>The mode of daily resting heart rate during a day segment.</td>
</tr>
<tr>
<td>stdrestinghr</td>
<td>beats/mins</td>
<td>The standard deviation of daily resting heart rate during a day segment.</td>
</tr>
<tr>
<td>diffmaxmoderestinghr</td>
<td>beats/mins</td>
<td>The difference between the maximum and mode daily resting heart rate during a day segment.</td>
</tr>
<tr>
<td>diffminmoderestinghr</td>
<td>beats/mins</td>
<td>The difference between the mode and minimum daily resting heart rate during a day segment.</td>
</tr>
<tr>
<td>entropyrestinghr</td>
<td>nats</td>
<td>Shannons entropy measurement based on daily resting heart rate during a day segment.</td>
</tr>
<tr>
<td>sumcaloriesZONE</td>
<td>cals</td>
<td>The total daily calories burned within <code>heartrate_zone</code> during a day segment.</td>
</tr>
<tr>
<td>maxcaloriesZONE</td>
<td>cals</td>
<td>The maximum daily calories burned within <code>heartrate_zone</code> during a day segment.</td>
</tr>
<tr>
<td>mincaloriesZONE</td>
<td>cals</td>
<td>The minimum daily calories burned within <code>heartrate_zone</code> during a day segment.</td>
</tr>
<tr>
<td>avgcaloriesZONE</td>
<td>cals</td>
<td>The average daily calories burned within <code>heartrate_zone</code> during a day segment.</td>
</tr>
<tr>
<td>mediancaloriesZONE</td>
<td>cals</td>
<td>The median of daily calories burned within <code>heartrate_zone</code> during a day segment.</td>
</tr>
<tr>
<td>stdcaloriesZONE</td>
<td>cals</td>
<td>The standard deviation of daily calories burned within <code>heartrate_zone</code> during a day segment.</td>
</tr>
<tr>
<td>entropycaloriesZONE</td>
<td>nats</td>
<td>Shannons entropy measurement based on daily calories burned within <code>heartrate_zone</code> during a day segment.</td>
</tr>
</tbody>
</table>
<div class="admonition note">
<p class="admonition-title">Assumptions/Observations</p>
<ol>
<li>
<p>There are four heart rate zones (ZONE): <code>outofrange</code>, <code>fatburn</code>, <code>cardio</code>, and <code>peak</code>. Please refer to <a href="https://help.fitbit.com/articles/en_US/Help_article/1565.htm">Fitbit documentation</a> for more information about the way they are computed.</p>
</li>
<li>
<p>Calories&rsquo; accuracy depends on the users Fitbit profile (weight, height, etc.).</p>
</li>
</ol>
</div>
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