1490 lines
39 KiB
HTML
1490 lines
39 KiB
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RAPIDS
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Virtual Environments
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carissalow/rapids
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carissalow/rapids
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File Structure
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Configuration
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Execution
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Example Workflows
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Minimal
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Analysis
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</li>
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</ul>
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4" type="checkbox" id="__nav_4" >
|
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|
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<label class="md-nav__link" for="__nav_4">
|
|
Behavioral Features
|
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<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Behavioral Features" data-md-level="1">
|
|
<label class="md-nav__title" for="__nav_4">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Behavioral Features
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
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<li class="md-nav__item">
|
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<a href="../../features/feature-introduction/" class="md-nav__link">
|
|
Introduction
|
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</a>
|
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</li>
|
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4_2" type="checkbox" id="__nav_4_2" >
|
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<label class="md-nav__link" for="__nav_4_2">
|
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Phone
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
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|
|
<nav class="md-nav" aria-label="Phone" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_4_2">
|
|
<span class="md-nav__icon md-icon"></span>
|
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Phone
|
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</label>
|
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<ul class="md-nav__list" data-md-scrollfix>
|
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<li class="md-nav__item">
|
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<a href="../../features/phone-accelerometer/" class="md-nav__link">
|
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Phone Accelerometer
|
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</a>
|
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</li>
|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-activity-recognition/" class="md-nav__link">
|
|
Phone Activity Recognition
|
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</a>
|
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</li>
|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-applications-foreground/" class="md-nav__link">
|
|
Phone Applications Foreground
|
|
</a>
|
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</li>
|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-battery/" class="md-nav__link">
|
|
Phone Battery
|
|
</a>
|
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</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-bluetooth/" class="md-nav__link">
|
|
Phone Bluetooth
|
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</a>
|
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</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-calls/" class="md-nav__link">
|
|
Phone Calls
|
|
</a>
|
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</li>
|
|
|
|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-conversation/" class="md-nav__link">
|
|
Phone Conversation
|
|
</a>
|
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</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-data-yield/" class="md-nav__link">
|
|
Phone Data Yield
|
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</a>
|
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</li>
|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-light/" class="md-nav__link">
|
|
Phone Light
|
|
</a>
|
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</li>
|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-locations/" class="md-nav__link">
|
|
Phone Locations
|
|
</a>
|
|
</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-messages/" class="md-nav__link">
|
|
Phone Messages
|
|
</a>
|
|
</li>
|
|
|
|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-screen/" class="md-nav__link">
|
|
Phone Screen
|
|
</a>
|
|
</li>
|
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|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-wifi-connected/" class="md-nav__link">
|
|
Phone WiFI Connected
|
|
</a>
|
|
</li>
|
|
|
|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-wifi-visible/" class="md-nav__link">
|
|
Phone WiFI Visible
|
|
</a>
|
|
</li>
|
|
|
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|
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|
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</ul>
|
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</nav>
|
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</li>
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<li class="md-nav__item md-nav__item--nested">
|
|
|
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|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4_3" type="checkbox" id="__nav_4_3" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_4_3">
|
|
Fitbit
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Fitbit" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_4_3">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Fitbit
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-heartrate-summary/" class="md-nav__link">
|
|
Fitbit Heart Rate Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-heartrate-intraday/" class="md-nav__link">
|
|
Fitbit Heart Rate Intraday
|
|
</a>
|
|
</li>
|
|
|
|
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|
|
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|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-sleep-summary/" class="md-nav__link">
|
|
Fitbit Sleep Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-steps-summary/" class="md-nav__link">
|
|
Fitbit Steps Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-steps-intraday/" class="md-nav__link">
|
|
Fitbit Steps Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
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|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/add-new-features/" class="md-nav__link">
|
|
Add New Features
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
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|
|
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
|
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|
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_5" type="checkbox" id="__nav_5" >
|
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|
|
<label class="md-nav__link" for="__nav_5">
|
|
Visualizations
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
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|
|
<nav class="md-nav" aria-label="Visualizations" data-md-level="1">
|
|
<label class="md-nav__title" for="__nav_5">
|
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<span class="md-nav__icon md-icon"></span>
|
|
Visualizations
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../visualizations/data-quality-visualizations/" class="md-nav__link">
|
|
Data Quality
|
|
</a>
|
|
</li>
|
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|
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|
|
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|
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|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../visualizations/feature-visualizations/" class="md-nav__link">
|
|
Features
|
|
</a>
|
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</li>
|
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</ul>
|
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</nav>
|
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</li>
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<li class="md-nav__item md-nav__item--active md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_6" type="checkbox" id="__nav_6" checked>
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<label class="md-nav__link" for="__nav_6">
|
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Developers
|
|
<span class="md-nav__icon md-icon"></span>
|
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</label>
|
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|
|
<nav class="md-nav" aria-label="Developers" data-md-level="1">
|
|
<label class="md-nav__title" for="__nav_6">
|
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<span class="md-nav__icon md-icon"></span>
|
|
Developers
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
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|
|
<li class="md-nav__item">
|
|
<a href="../git-flow/" class="md-nav__link">
|
|
Git Flow
|
|
</a>
|
|
</li>
|
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|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../remote-support/" class="md-nav__link">
|
|
Remote Support
|
|
</a>
|
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</li>
|
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<li class="md-nav__item md-nav__item--active">
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<input class="md-nav__toggle md-toggle" data-md-toggle="toc" type="checkbox" id="__toc">
|
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|
|
<label class="md-nav__link md-nav__link--active" for="__toc">
|
|
Virtual Environments
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<a href="./" class="md-nav__link md-nav__link--active">
|
|
Virtual Environments
|
|
</a>
|
|
|
|
|
|
<nav class="md-nav md-nav--secondary" aria-label="Table of contents">
|
|
|
|
|
|
|
|
<label class="md-nav__title" for="__toc">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Table of contents
|
|
</label>
|
|
<ul class="md-nav__list" data-md-component="toc" data-md-scrollfix>
|
|
|
|
<li class="md-nav__item">
|
|
<a href="#python-virtual-environment" class="md-nav__link">
|
|
Python Virtual Environment
|
|
</a>
|
|
|
|
<nav class="md-nav" aria-label="Python Virtual Environment">
|
|
<ul class="md-nav__list">
|
|
|
|
<li class="md-nav__item">
|
|
<a href="#add-new-packages" class="md-nav__link">
|
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Add new packages
|
|
</a>
|
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|
|
</li>
|
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|
|
<li class="md-nav__item">
|
|
<a href="#remove-packages" class="md-nav__link">
|
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Remove packages
|
|
</a>
|
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|
|
</li>
|
|
|
|
<li class="md-nav__item">
|
|
<a href="#updating-all-packages" class="md-nav__link">
|
|
Updating all packages
|
|
</a>
|
|
|
|
</li>
|
|
|
|
<li class="md-nav__item">
|
|
<a href="#update-your-conda-environmentyaml" class="md-nav__link">
|
|
Update your conda environment.yaml
|
|
</a>
|
|
|
|
</li>
|
|
|
|
</ul>
|
|
</nav>
|
|
|
|
</li>
|
|
|
|
<li class="md-nav__item">
|
|
<a href="#r-virtual-environment" class="md-nav__link">
|
|
R Virtual Environment
|
|
</a>
|
|
|
|
<nav class="md-nav" aria-label="R Virtual Environment">
|
|
<ul class="md-nav__list">
|
|
|
|
<li class="md-nav__item">
|
|
<a href="#add-new-packages_1" class="md-nav__link">
|
|
Add new packages
|
|
</a>
|
|
|
|
</li>
|
|
|
|
<li class="md-nav__item">
|
|
<a href="#remove-packages_1" class="md-nav__link">
|
|
Remove packages
|
|
</a>
|
|
|
|
</li>
|
|
|
|
<li class="md-nav__item">
|
|
<a href="#updating-all-packages_1" class="md-nav__link">
|
|
Updating all packages
|
|
</a>
|
|
|
|
</li>
|
|
|
|
<li class="md-nav__item">
|
|
<a href="#update-your-r-renvlock" class="md-nav__link">
|
|
Update your R renv.lock
|
|
</a>
|
|
|
|
</li>
|
|
|
|
</ul>
|
|
</nav>
|
|
|
|
</li>
|
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|
|
</ul>
|
|
|
|
</nav>
|
|
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|
</li>
|
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|
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|
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|
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|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../documentation/" class="md-nav__link">
|
|
Documentation
|
|
</a>
|
|
</li>
|
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|
|
|
|
|
|
|
|
|
|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../testing/" class="md-nav__link">
|
|
Testing
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../test-cases/" class="md-nav__link">
|
|
Test cases
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
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|
|
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_7" type="checkbox" id="__nav_7" >
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|
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<label class="md-nav__link" for="__nav_7">
|
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Others
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|
<span class="md-nav__icon md-icon"></span>
|
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</label>
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|
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<nav class="md-nav" aria-label="Others" data-md-level="1">
|
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<label class="md-nav__title" for="__nav_7">
|
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<span class="md-nav__icon md-icon"></span>
|
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Others
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</label>
|
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<ul class="md-nav__list" data-md-scrollfix>
|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../../migrating-from-old-versions/" class="md-nav__link">
|
|
Migrating from beta
|
|
</a>
|
|
</li>
|
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|
|
|
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<li class="md-nav__item">
|
|
<a href="../../code_of_conduct/" class="md-nav__link">
|
|
Code of Conduct
|
|
</a>
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</li>
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<li class="md-nav__item">
|
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<h1>Virtual Environments</h1>
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<h2 id="python-virtual-environment">Python Virtual Environment<a class="headerlink" href="#python-virtual-environment" title="Permanent link">¶</a></h2>
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<h3 id="add-new-packages">Add new packages<a class="headerlink" href="#add-new-packages" title="Permanent link">¶</a></h3>
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<p>Try to install any new package using <code>conda install -c CHANNEL PACKAGE_NAME</code> (you can use <code>pip</code> if the package is only available there). Make sure your Python virtual environment is active (<code>conda activate YOUR_ENV</code>).</p>
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<h3 id="remove-packages">Remove packages<a class="headerlink" href="#remove-packages" title="Permanent link">¶</a></h3>
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<p>Uninstall packages using the same manager you used to install them <code>conda remove PACKAGE_NAME</code> or <code>pip uninstall PACKAGE_NAME</code></p>
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<h3 id="updating-all-packages">Updating all packages<a class="headerlink" href="#updating-all-packages" title="Permanent link">¶</a></h3>
|
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<p>Make sure your Python virtual environment is active (<code>conda activate YOUR_ENV</code>), then run
|
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<div class="highlight"><pre><span></span><code>conda update --all
|
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</code></pre></div></p>
|
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<h3 id="update-your-conda-environmentyaml">Update your conda <code>environment.yaml</code><a class="headerlink" href="#update-your-conda-environmentyaml" title="Permanent link">¶</a></h3>
|
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<p>After installing or removing a package you can use the following command in your terminal to update your <code>environment.yaml</code> before publishing your pipeline. Note that we ignore the package version for <code>libfortran</code> and <code>mkl</code> to keep compatibility with Linux:
|
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<div class="highlight"><pre><span></span><code>conda env <span class="nb">export</span> --no-builds <span class="p">|</span> sed <span class="s1">'s/^.*libgfortran.*$/ - libgfortran/'</span> <span class="p">|</span> sed <span class="s1">'s/^.*mkl=.*$/ - mkl/'</span> > environment.yml
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</code></pre></div></p>
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<h2 id="r-virtual-environment">R Virtual Environment<a class="headerlink" href="#r-virtual-environment" title="Permanent link">¶</a></h2>
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<h3 id="add-new-packages_1">Add new packages<a class="headerlink" href="#add-new-packages_1" title="Permanent link">¶</a></h3>
|
|
<ol>
|
|
<li>Open your terminal and navigate to RAPIDS’ root folder</li>
|
|
<li>Run <code>R</code> to open an R interactive session</li>
|
|
<li>Run <code>renv::install("PACKAGE_NAME")</code></li>
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</ol>
|
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<h3 id="remove-packages_1">Remove packages<a class="headerlink" href="#remove-packages_1" title="Permanent link">¶</a></h3>
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<ol>
|
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<li>Open your terminal and navigate to RAPIDS’ root folder</li>
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<li>Run <code>R</code> to open an R interactive session</li>
|
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<li>Run <code>renv::remove("PACKAGE_NAME")</code></li>
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<h3 id="updating-all-packages_1">Updating all packages<a class="headerlink" href="#updating-all-packages_1" title="Permanent link">¶</a></h3>
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<ol>
|
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<li>Open your terminal and navigate to RAPIDS’ root folder</li>
|
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<li>Run <code>R</code> to open an R interactive session</li>
|
|
<li>Run <code>renv::update()</code></li>
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<h3 id="update-your-r-renvlock">Update your R <code>renv.lock</code><a class="headerlink" href="#update-your-r-renvlock" title="Permanent link">¶</a></h3>
|
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<p>After installing or removing a package you can use the following command in your terminal to update your <code>renv.lock</code> before publishing your pipeline.</p>
|
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<ol>
|
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<li>Open your terminal and navigate to RAPIDS’ root folder</li>
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<li>Run <code>R</code> to open an R interactive session</li>
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