80 lines
3.9 KiB
Python
80 lines
3.9 KiB
Python
rule histogram_phone_data_yield:
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input:
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"data/processed/features/all_participants/all_sensor_features.csv"
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output:
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"reports/data_exploration/histogram_phone_data_yield.html"
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script:
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"../src/visualization/histogram_phone_data_yield.py"
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rule heatmap_features_correlations:
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input:
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features = expand("data/processed/{pid}/{sensor}_{time_segment}.csv", pid=config["PIDS"], sensor=config["HEATMAP_FEATURES_CORRELATIONS"]["PHONE_FEATURES"]+config["HEATMAP_FEATURES_CORRELATIONS"]["FITBIT_FEATURES"], time_segment=config["TIME_SEGMENTS"]),
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phone_valid_sensed_days = expand("data/interim/{pid}/phone_valid_sensed_days_{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins.csv", pid=config["PIDS"])
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params:
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min_rows_ratio = config["HEATMAP_FEATURES_CORRELATIONS"]["MIN_ROWS_RATIO"],
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corr_threshold = config["HEATMAP_FEATURES_CORRELATIONS"]["CORR_THRESHOLD"],
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corr_method = config["HEATMAP_FEATURES_CORRELATIONS"]["CORR_METHOD"]
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output:
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"reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/heatmap_features_correlations.html"
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script:
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"../src/visualization/heatmap_features_correlations.py"
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rule heatmap_days_by_sensors:
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input:
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sensors = optional_heatmap_days_by_sensors_input,
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phone_valid_sensed_days = "data/interim/{pid}/phone_valid_sensed_days_{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins.csv"
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params:
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pid = "{pid}",
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expected_num_of_days = config["HEATMAP_DAYS_BY_SENSORS"]["EXPECTED_NUM_OF_DAYS"]
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output:
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"reports/interim/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/{pid}/heatmap_days_by_sensors.html"
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script:
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"../src/visualization/heatmap_days_by_sensors.py"
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rule heatmap_days_by_sensors_all_participants:
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input:
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heatmap_rows = expand("reports/interim/{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins/{pid}/heatmap_days_by_sensors.html", pid=config["PIDS"])
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output:
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"reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/heatmap_days_by_sensors_all_participants.html"
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script:
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"../src/visualization/heatmap_days_by_sensors_all_participants.Rmd"
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rule heatmap_sensed_bins:
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input:
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sensor = "data/interim/{pid}/phone_sensed_bins.csv",
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pid_file = "data/external/{pid}"
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params:
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pid = "{pid}",
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bin_size = config["HEATMAP_SENSED_BINS"]["BIN_SIZE"]
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output:
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"reports/interim/heatmap_sensed_bins/{pid}/heatmap_sensed_bins.html"
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script:
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"../src/visualization/heatmap_sensed_bins.py"
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rule heatmap_sensed_bins_all_participants:
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input:
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heatmap_sensed_bins = expand("reports/interim/heatmap_sensed_bins/{pid}/heatmap_sensed_bins.html", pid=config["PIDS"])
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output:
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"reports/data_exploration/heatmap_sensed_bins_all_participants.html"
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script:
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"../src/visualization/heatmap_sensed_bins_all_participants.Rmd"
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rule overall_compliance_heatmap:
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input:
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phone_sensed_bins = expand("data/interim/{pid}/phone_sensed_bins.csv", pid=config["PIDS"]),
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phone_valid_sensed_days = expand("data/interim/{pid}/phone_valid_sensed_days_{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins.csv", pid=config["PIDS"]),
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pid_files = expand("data/external/{pid}", pid=config["PIDS"])
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params:
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only_show_valid_days = config["OVERALL_COMPLIANCE_HEATMAP"]["ONLY_SHOW_VALID_DAYS"],
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local_timezone = config["PHONE_DATA_CONFIGURATION"]["TIMEZONE"]["VALUE"],
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expected_num_of_days = config["OVERALL_COMPLIANCE_HEATMAP"]["EXPECTED_NUM_OF_DAYS"],
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bin_size = config["OVERALL_COMPLIANCE_HEATMAP"]["BIN_SIZE"],
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min_bins_per_hour = "{min_valid_bins_per_hour}"
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output:
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"reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/overall_compliance_heatmap.html"
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script:
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"../src/visualization/overall_compliance_heatmap.py"
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