rapids/.travis.yml

41 lines
1015 B
YAML

language: python
python:
- "3.7"
services:
- mysql
before_install:
- sudo apt-get install -y r-base
r_binary_packages:
- rmarkdown
repos:
CRAN: https://cran.us.r-project.org
install:
- wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
- bash miniconda.sh -b -p $HOME/miniconda
- source "$HOME/miniconda/etc/profile.d/conda.sh"
- hash -r
- conda config --set always_yes yes --set changeps1 no
- conda update -q conda
# Useful for debugging any issues with conda
- conda info -a
# Replace dep1 dep2 ... with your dependencies
- conda env create -q -n test-environment python=$TRAVIS_PYTHON_VERSION --file environment.yml
- conda activate test-environment
before_script:
# Install Packrat
- R -e "packrat::install"
- R -e "packrat::init"
- R -e "packrat::restore"
script:
- cp -r tests/data/raw/* data/raw
- snakemake --profile tests/settings -R sensor_features
- ./env/bin/python -m unittest discover tests/scripts/ -v