rapids/rules/models.smk

28 lines
912 B
Python

rule merge_baseline_data:
input:
data = expand(config["PARAMS_FOR_ANALYSIS"]["BASELINE"]["FOLDER"] + "/{container}", container=config["PARAMS_FOR_ANALYSIS"]["BASELINE"]["CONTAINER"])
output:
"data/raw/baseline_merged.csv"
script:
"../src/data/merge_baseline_data.py"
rule download_baseline_data:
input:
participant_file = "data/external/participant_files/{pid}.yaml",
data = "data/raw/baseline_merged.csv"
output:
"data/raw/{pid}/participant_baseline_raw.csv"
script:
"../src/data/download_baseline_data.py"
rule baseline_features:
input:
"data/raw/{pid}/participant_baseline_raw.csv"
params:
pid="{pid}",
features=config["PARAMS_FOR_ANALYSIS"]["BASELINE"]["FEATURES"]
output:
"data/processed/features/{pid}/baseline_features.csv"
script:
"../src/data/baseline_features.py"