2031 lines
52 KiB
HTML
2031 lines
52 KiB
HTML
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<!doctype html>
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<html lang="en" class="no-js">
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<head>
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<meta charset="utf-8">
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<meta name="viewport" content="width=device-width,initial-scale=1">
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<link rel="canonical" href="https://www.rapids.science/1.1/workflow-examples/minimal/">
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<link rel="icon" href="../../img/logo.png">
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<meta name="generator" content="mkdocs-1.1.2, mkdocs-material-7.1.6+insiders-2.9.1">
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<title>Minimal Example - RAPIDS</title>
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<link rel="stylesheet" href="../../assets/stylesheets/main.92048cb8.min.css">
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<link rel="stylesheet" href="../../assets/stylesheets/palette.73e53a79.min.css">
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<link rel="preconnect" href="https://fonts.gstatic.com" crossorigin>
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<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:300,400,400i,700%7CRoboto+Mono&display=fallback">
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<style>:root{--md-text-font-family:"Roboto";--md-code-font-family:"Roboto Mono"}</style>
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<link rel="stylesheet" href="../../stylesheets/extra.css">
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</head>
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<body dir="ltr" data-md-color-scheme="default" data-md-color-primary="blue" data-md-color-accent="blue">
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<script>function __scope(t,e="../.."){return new URL(e,location).pathname+"."+t}function __get(t,e=localStorage,n){return JSON.parse(e.getItem(__scope(t,n)))}function __set(t,e,n=localStorage,o){try{n.setItem(__scope(t,o),JSON.stringify(e))}catch(t){}}</script>
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<script>var palette=__get("__palette");if(palette&&"object"==typeof palette.color)for(var[key,value]of Object.entries(palette.color))document.body.setAttribute("data-md-color-"+key,value)</script>
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<input class="md-toggle" data-md-toggle="drawer" type="checkbox" id="__drawer" autocomplete="off">
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<input class="md-toggle" data-md-toggle="search" type="checkbox" id="__search" autocomplete="off">
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<label class="md-overlay" for="__drawer"></label>
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<div data-md-component="skip">
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<a href="#minimal-working-example" class="md-skip">
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Skip to content
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</a>
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</div>
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<div data-md-component="announce">
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</div>
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<div data-md-component="outdated" hidden>
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<aside class="md-banner md-banner--warning">
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<div class="md-banner__inner md-grid md-typeset">
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You're not viewing the latest stable version of RAPIDS.
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<a href="https://www.rapids.science/latest/">
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<strong> Click here to go to latest. </strong>
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</a>
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</div>
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<script>var el=document.querySelector("[data-md-component=outdated]"),outdated=__get("__outdated",sessionStorage);!0===outdated&&el&&(el.hidden=!1)</script>
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</aside>
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</div>
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<header class="md-header" data-md-component="header">
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<nav class="md-header__inner md-grid" aria-label="Header">
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<a href="../.." title="RAPIDS" class="md-header__button md-logo" aria-label="RAPIDS" data-md-component="logo">
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<img src="../../img/logo.png" alt="logo">
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</a>
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<label class="md-header__button md-icon" for="__drawer">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M3 6h18v2H3V6m0 5h18v2H3v-2m0 5h18v2H3v-2z"/></svg>
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</label>
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<div class="md-header__title" data-md-component="header-title">
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<div class="md-header__ellipsis">
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<div class="md-header__topic">
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<span class="md-ellipsis">
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RAPIDS
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</span>
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</div>
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<div class="md-header__topic" data-md-component="header-topic">
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<span class="md-ellipsis">
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Minimal Example
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</span>
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</div>
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</div>
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</div>
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<form class="md-header__option" data-md-component="palette">
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<input class="md-option" data-md-color-media="" data-md-color-scheme="default" data-md-color-primary="blue" data-md-color-accent="blue" type="radio" name="__palette" id="__palette_1">
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<label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M17 7H7a5 5 0 0 0-5 5 5 5 0 0 0 5 5h10a5 5 0 0 0 5-5 5 5 0 0 0-5-5m0 8a3 3 0 0 1-3-3 3 3 0 0 1 3-3 3 3 0 0 1 3 3 3 3 0 0 1-3 3z"/></svg>
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</label>
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<input class="md-option" data-md-color-media="" data-md-color-scheme="slate" data-md-color-primary="blue" data-md-color-accent="blue" type="radio" name="__palette" id="__palette_2">
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<label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M7 10a2 2 0 0 1 2 2 2 2 0 0 1-2 2 2 2 0 0 1-2-2 2 2 0 0 1 2-2m10-3a5 5 0 0 1 5 5 5 5 0 0 1-5 5H7a5 5 0 0 1-5-5 5 5 0 0 1 5-5h10M7 9a3 3 0 0 0-3 3 3 3 0 0 0 3 3h10a3 3 0 0 0 3-3 3 3 0 0 0-3-3H7z"/></svg>
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</label>
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</form>
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<label class="md-header__button md-icon" for="__search">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5z"/></svg>
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</label>
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<div class="md-search" data-md-component="search" role="dialog">
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<label class="md-search__overlay" for="__search"></label>
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<div class="md-search__inner" role="search">
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<form class="md-search__form" name="search">
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<input type="text" class="md-search__input" name="query" aria-label="Search" placeholder="Search" autocapitalize="off" autocorrect="off" autocomplete="off" spellcheck="false" data-md-component="search-query" required>
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<label class="md-search__icon md-icon" for="__search">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5z"/></svg>
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11h12z"/></svg>
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</label>
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<nav class="md-search__options" aria-label="Search">
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<button type="reset" class="md-search__icon md-icon" aria-label="Clear" tabindex="-1">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41z"/></svg>
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</button>
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</nav>
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<div class="md-search__suggest" data-md-component="search-suggest"></div>
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</form>
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<div class="md-search__output">
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<div class="md-search__scrollwrap" data-md-scrollfix>
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<div class="md-search-result" data-md-component="search-result">
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<div class="md-search-result__meta">
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Initializing search
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</div>
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<ol class="md-search-result__list"></ol>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div class="md-header__source">
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<a href="https://github.com/carissalow/rapids/" title="Go to repository" class="md-source" data-md-component="source">
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<div class="md-source__icon md-icon">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81z"/></svg>
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</div>
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<div class="md-source__repository">
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carissalow/rapids
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</div>
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</a>
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</div>
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</nav>
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</header>
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<div class="md-container" data-md-component="container">
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<main class="md-main" data-md-component="main">
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<div class="md-main__inner md-grid">
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<div class="md-sidebar md-sidebar--primary" data-md-component="sidebar" data-md-type="navigation" >
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<div class="md-sidebar__scrollwrap">
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<div class="md-sidebar__inner">
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<nav class="md-nav md-nav--primary" aria-label="Navigation" data-md-level="0">
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<label class="md-nav__title" for="__drawer">
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<a href="../.." title="RAPIDS" class="md-nav__button md-logo" aria-label="RAPIDS" data-md-component="logo">
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<img src="../../img/logo.png" alt="logo">
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</a>
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RAPIDS
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</label>
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<div class="md-nav__source">
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<a href="https://github.com/carissalow/rapids/" title="Go to repository" class="md-source" data-md-component="source">
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<div class="md-source__icon md-icon">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81z"/></svg>
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</div>
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<div class="md-source__repository">
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carissalow/rapids
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</div>
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</a>
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</div>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../.." class="md-nav__link">
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Home
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</a>
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</li>
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<li class="md-nav__item md-nav__item--active md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_2" type="checkbox" id="__nav_2" checked>
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<label class="md-nav__link" for="__nav_2">
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Setup
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Setup" data-md-level="1">
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<label class="md-nav__title" for="__nav_2">
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<span class="md-nav__icon md-icon"></span>
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Setup
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../../setup/overview/" class="md-nav__link">
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Overview
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</a>
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</li>
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<li class="md-nav__item md-nav__item--active">
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<input class="md-nav__toggle md-toggle" data-md-toggle="toc" type="checkbox" id="__toc">
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<a href="./" class="md-nav__link md-nav__link--active">
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Minimal Example
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../setup/installation/" class="md-nav__link">
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Installation
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../setup/configuration/" class="md-nav__link">
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Configuration
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../setup/execution/" class="md-nav__link">
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Execution
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../citation/" class="md-nav__link">
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Citation
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</a>
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</li>
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</ul>
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_3" type="checkbox" id="__nav_3" >
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<label class="md-nav__link" for="__nav_3">
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Data Streams
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Data Streams" data-md-level="1">
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<label class="md-nav__title" for="__nav_3">
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<span class="md-nav__icon md-icon"></span>
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Data Streams
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../../datastreams/data-streams-introduction/" class="md-nav__link">
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Introduction
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</a>
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</li>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_3_2" type="checkbox" id="__nav_3_2" >
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<label class="md-nav__link" for="__nav_3_2">
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Phone
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Phone" data-md-level="2">
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<label class="md-nav__title" for="__nav_3_2">
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<span class="md-nav__icon md-icon"></span>
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Phone
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../../datastreams/aware-mysql/" class="md-nav__link">
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aware_mysql
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../datastreams/aware-csv/" class="md-nav__link">
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aware_csv
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../datastreams/aware-influxdb/" class="md-nav__link">
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aware_influxdb (beta)
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../datastreams/mandatory-phone-format/" class="md-nav__link">
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Mandatory Phone Format
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</a>
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</li>
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</ul>
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_3_3" type="checkbox" id="__nav_3_3" >
|
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|
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<label class="md-nav__link" for="__nav_3_3">
|
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Fitbit
|
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<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
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|
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<nav class="md-nav" aria-label="Fitbit" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_3_3">
|
|
<span class="md-nav__icon md-icon"></span>
|
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Fitbit
|
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</label>
|
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<ul class="md-nav__list" data-md-scrollfix>
|
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|
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<li class="md-nav__item">
|
|
<a href="../../datastreams/fitbitjson-mysql/" class="md-nav__link">
|
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fitbitjson_mysql
|
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</a>
|
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</li>
|
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<li class="md-nav__item">
|
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<a href="../../datastreams/fitbitjson-csv/" class="md-nav__link">
|
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fitbitjson_csv
|
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</a>
|
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</li>
|
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<li class="md-nav__item">
|
|
<a href="../../datastreams/fitbitparsed-mysql/" class="md-nav__link">
|
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fitbitparsed_mysql
|
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</a>
|
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</li>
|
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<li class="md-nav__item">
|
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<a href="../../datastreams/fitbitparsed-csv/" class="md-nav__link">
|
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fitbitparsed_csv
|
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</a>
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</li>
|
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|
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<li class="md-nav__item">
|
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<a href="../../datastreams/mandatory-fitbit-format/" class="md-nav__link">
|
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Mandatory Fitbit Format
|
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</a>
|
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</li>
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</ul>
|
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_3_4" type="checkbox" id="__nav_3_4" >
|
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|
<label class="md-nav__link" for="__nav_3_4">
|
|
Empatica
|
|
<span class="md-nav__icon md-icon"></span>
|
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</label>
|
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|
|
<nav class="md-nav" aria-label="Empatica" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_3_4">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Empatica
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
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|
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|
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|
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<li class="md-nav__item">
|
|
<a href="../../datastreams/empatica-zip/" class="md-nav__link">
|
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empatica_zip
|
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</a>
|
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</li>
|
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<li class="md-nav__item">
|
|
<a href="../../datastreams/mandatory-empatica-format/" class="md-nav__link">
|
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Mandatory Empatica Format
|
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</a>
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</li>
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</ul>
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</nav>
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</li>
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<li class="md-nav__item">
|
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<a href="../../datastreams/add-new-data-streams/" class="md-nav__link">
|
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Add New Data Streams
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</a>
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</li>
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</ul>
|
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4" type="checkbox" id="__nav_4" >
|
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|
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<label class="md-nav__link" for="__nav_4">
|
|
Behavioral Features
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
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|
|
<nav class="md-nav" aria-label="Behavioral Features" data-md-level="1">
|
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<label class="md-nav__title" for="__nav_4">
|
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<span class="md-nav__icon md-icon"></span>
|
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Behavioral Features
|
|
</label>
|
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<ul class="md-nav__list" data-md-scrollfix>
|
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<li class="md-nav__item">
|
|
<a href="../../features/feature-introduction/" class="md-nav__link">
|
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Introduction
|
|
</a>
|
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</li>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4_2" type="checkbox" id="__nav_4_2" >
|
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<label class="md-nav__link" for="__nav_4_2">
|
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Phone
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
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|
|
<nav class="md-nav" aria-label="Phone" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_4_2">
|
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<span class="md-nav__icon md-icon"></span>
|
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Phone
|
|
</label>
|
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<ul class="md-nav__list" data-md-scrollfix>
|
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|
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|
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|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-accelerometer/" class="md-nav__link">
|
|
Phone Accelerometer
|
|
</a>
|
|
</li>
|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-activity-recognition/" class="md-nav__link">
|
|
Phone Activity Recognition
|
|
</a>
|
|
</li>
|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-applications-crashes/" class="md-nav__link">
|
|
Phone Applications Crashes
|
|
</a>
|
|
</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-applications-foreground/" class="md-nav__link">
|
|
Phone Applications Foreground
|
|
</a>
|
|
</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-applications-notifications/" class="md-nav__link">
|
|
Phone Applications Notifications
|
|
</a>
|
|
</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-battery/" class="md-nav__link">
|
|
Phone Battery
|
|
</a>
|
|
</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-bluetooth/" class="md-nav__link">
|
|
Phone Bluetooth
|
|
</a>
|
|
</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-calls/" class="md-nav__link">
|
|
Phone Calls
|
|
</a>
|
|
</li>
|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-conversation/" class="md-nav__link">
|
|
Phone Conversation
|
|
</a>
|
|
</li>
|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-data-yield/" class="md-nav__link">
|
|
Phone Data Yield
|
|
</a>
|
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</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-keyboard/" class="md-nav__link">
|
|
Phone Keyboard
|
|
</a>
|
|
</li>
|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-light/" class="md-nav__link">
|
|
Phone Light
|
|
</a>
|
|
</li>
|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-locations/" class="md-nav__link">
|
|
Phone Locations
|
|
</a>
|
|
</li>
|
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<li class="md-nav__item">
|
|
<a href="../../features/phone-log/" class="md-nav__link">
|
|
Phone Log
|
|
</a>
|
|
</li>
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-messages/" class="md-nav__link">
|
|
Phone Messages
|
|
</a>
|
|
</li>
|
|
|
|
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|
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|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-screen/" class="md-nav__link">
|
|
Phone Screen
|
|
</a>
|
|
</li>
|
|
|
|
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|
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|
|
|
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|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-wifi-connected/" class="md-nav__link">
|
|
Phone WiFI Connected
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../features/phone-wifi-visible/" class="md-nav__link">
|
|
Phone WiFI Visible
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4_3" type="checkbox" id="__nav_4_3" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_4_3">
|
|
Fitbit
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Fitbit" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_4_3">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Fitbit
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-calories-intraday/" class="md-nav__link">
|
|
Fitbit Calories Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-data-yield/" class="md-nav__link">
|
|
Fitbit Data Yield
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-heartrate-summary/" class="md-nav__link">
|
|
Fitbit Heart Rate Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-heartrate-intraday/" class="md-nav__link">
|
|
Fitbit Heart Rate Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-sleep-summary/" class="md-nav__link">
|
|
Fitbit Sleep Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-sleep-intraday/" class="md-nav__link">
|
|
Fitbit Sleep Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-steps-summary/" class="md-nav__link">
|
|
Fitbit Steps Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/fitbit-steps-intraday/" class="md-nav__link">
|
|
Fitbit Steps Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4_4" type="checkbox" id="__nav_4_4" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_4_4">
|
|
Empatica
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Empatica" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_4_4">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Empatica
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-accelerometer/" class="md-nav__link">
|
|
Empatica Accelerometer
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-heartrate/" class="md-nav__link">
|
|
Empatica Heart Rate
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-temperature/" class="md-nav__link">
|
|
Empatica Temperature
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-electrodermal-activity/" class="md-nav__link">
|
|
Empatica Electrodermal Activity
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-blood-volume-pulse/" class="md-nav__link">
|
|
Empatica Blood Volume Pulse
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-inter-beat-interval/" class="md-nav__link">
|
|
Empatica Inter Beat Interval
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../features/empatica-tags/" class="md-nav__link">
|
|
Empatica Tags
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20.71 7.04c.39-.39.39-1.04 0-1.41l-2.34-2.34c-.37-.39-1.02-.39-1.41 0l-1.84 1.83 3.75 3.75M3 17.25V21h3.75L17.81 9.93l-3.75-3.75L3 17.25z"/></svg>
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<h1 id="minimal-working-example">Minimal Working Example<a class="headerlink" href="#minimal-working-example" title="Permanent link">¶</a></h1>
|
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<p>This is a quick guide for creating and running a simple pipeline to extract missing, outgoing, and incoming <code>call</code> features for <code>24 hr</code> (<code>00:00:00</code> to <code>23:59:59</code>) and <code>night</code> (<code>00:00:00</code> to <code>05:59:59</code>) time segments of every day of data of one participant that was monitored on the US East coast with an Android smartphone.</p>
|
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<ol>
|
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<li>Install RAPIDS and make sure your <code>conda</code> environment is active (see <a href="../../setup/installation">Installation</a>)</li>
|
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<li>Download this <a href="../../img/calls.csv">CSV file</a> and save it as <code>data/external/aware_csv/calls.csv</code></li>
|
|
<li>
|
|
<p>Make the changes listed below for the corresponding <a href="../../setup/configuration">Configuration</a> step (we provide an example of what the relevant sections in your <code>config.yml</code> will look like after you are done)</p>
|
|
<details class="info"><summary>Required configuration changes (<em>click to expand</em>)</summary><ol>
|
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<li>
|
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<p><strong>Supported <a href="../../setup/configuration#supported-data-streams">data streams</a>.</strong> </p>
|
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<p>Based on the docs, we decided to use the <code>aware_csv</code> data stream because we are processing aware data saved in a CSV file. We will use this label in a later step; there’s no need to type it or save it anywhere yet.</p>
|
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</li>
|
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<li>
|
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<p><strong>Create your <a href="../../setup/configuration#participant-files">participants file</a>.</strong></p>
|
|
<p>Since we are processing data from a single participant, you only need to create a single participant file called <code>p01.yaml</code> in <code>data/external/participant_files</code>. This participant file only has a <code>PHONE</code> section because this hypothetical participant was only monitored with a smartphone. Note that for a real analysis, you can do this <a href="../../setup/configuration##automatic-creation-of-participant-files">automatically with a CSV file</a></p>
|
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<ol>
|
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<li>
|
|
<p>Add <code>p01</code> to <code>[PIDS]</code> in <code>config.yaml</code></p>
|
|
</li>
|
|
<li>
|
|
<p>Create a file in <code>data/external/participant_files/p01.yaml</code> with the following content:</p>
|
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<div class="highlight"><pre><span></span><code><span class="nt">PHONE</span><span class="p">:</span>
|
|
<span class="nt">DEVICE_IDS</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="nv">a748ee1a-1d0b-4ae9-9074-279a2b6ba524</span><span class="p p-Indicator">]</span> <span class="c1"># the participant's AWARE device id</span>
|
|
<span class="nt">PLATFORMS</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="nv">android</span><span class="p p-Indicator">]</span> <span class="c1"># or ios</span>
|
|
<span class="nt">LABEL</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">MyTestP01</span> <span class="c1"># any string</span>
|
|
<span class="nt">START_DATE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">2020-01-01</span> <span class="c1"># this can also be empty</span>
|
|
<span class="nt">END_DATE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">2021-01-01</span> <span class="c1"># this can also be empty</span>
|
|
</code></pre></div>
|
|
</li>
|
|
</ol>
|
|
</li>
|
|
<li>
|
|
<p><strong>Select what <a href="../../setup/configuration#time-segments">time segments</a> you want to extract features on.</strong> </p>
|
|
<ol>
|
|
<li>
|
|
<p>Set <code>[TIME_SEGMENTS][FILE]</code> to <code>data/external/timesegments_periodic.csv</code> </p>
|
|
</li>
|
|
<li>
|
|
<p>Create a file in <code>data/external/timesegments_periodic.csv</code> with the following content</p>
|
|
<div class="highlight"><pre><span></span><code>label,start_time,length,repeats_on,repeats_value
|
|
daily,00:00:00,23H 59M 59S,every_day,0
|
|
night,00:00:00,5H 59M 59S,every_day,0
|
|
</code></pre></div>
|
|
</li>
|
|
</ol>
|
|
</li>
|
|
<li>
|
|
<p><strong>Choose the <a href="../../setup/configuration#timezone-of-your-study">timezone of your study</a>.</strong> </p>
|
|
<p>We will use the default time zone settings since this example is processing data collected on the US East Coast (<code>America/New_York</code>)</p>
|
|
<div class="highlight"><pre><span></span><code><span class="nt">TIMEZONE</span><span class="p">:</span>
|
|
<span class="nt">TYPE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">SINGLE</span>
|
|
<span class="nt">SINGLE</span><span class="p">:</span>
|
|
<span class="nt">TZCODE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">America/New_York</span>
|
|
</code></pre></div>
|
|
</li>
|
|
<li>
|
|
<p><strong>Modify your <a href="../../setup/configuration#data-stream-configuration">device data stream configuration</a></strong></p>
|
|
<ol>
|
|
<li>
|
|
<p>Set <code>[PHONE_DATA_STREAMS][USE]</code> to <code>aware_csv</code>. </p>
|
|
</li>
|
|
<li>
|
|
<p>We will use the default value for <code>[PHONE_DATA_STREAMS][aware_csv][FOLDER]</code> since we already stored the test calls CSV file there.</p>
|
|
</li>
|
|
</ol>
|
|
</li>
|
|
<li>
|
|
<p><strong>Select what <a href="../../setup/configuration#sensor-and-features-to-process">sensors and features</a> you want to process.</strong> </p>
|
|
<ol>
|
|
<li>
|
|
<p>Set <code>[PHONE_CALLS][CONTAINER]</code> to <code>calls.csv</code> in the <code>config.yaml</code> file.</p>
|
|
</li>
|
|
<li>
|
|
<p>Set <code>[PHONE_CALLS][PROVIDERS][RAPIDS][COMPUTE]</code> to <code>True</code> in the <code>config.yaml</code> file.</p>
|
|
</li>
|
|
</ol>
|
|
</li>
|
|
</ol>
|
|
</details>
|
|
<div class="admonition example">
|
|
<p class="admonition-title">Example of the <code>config.yaml</code> sections after the changes outlined above</p>
|
|
<p>This will be your <code>config.yaml</code> after following the instructions above. Click on the numbered markers to know more.</p>
|
|
<div class="annotate highlight"><pre><span></span><code><span class="nt">PIDS</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="nv">p01</span><span class="p p-Indicator">]</span> <span class="c1"># (1)</span>
|
|
|
|
<span class="nt">TIMEZONE</span><span class="p">:</span>
|
|
<span class="nt">TYPE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">SINGLE</span> <span class="c1"># (2)</span>
|
|
<span class="nt">SINGLE</span><span class="p">:</span>
|
|
<span class="nt">TZCODE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">America/New_York</span>
|
|
|
|
<span class="c1"># ... other irrelevant sections</span>
|
|
|
|
<span class="nt">TIME_SEGMENTS</span><span class="p">:</span> <span class="nl">&time_segments</span>
|
|
<span class="nt">TYPE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">PERIODIC</span> <span class="c1"># (3)</span>
|
|
<span class="nt">FILE</span><span class="p">:</span> <span class="s">"data/external/timesegments_periodic.csv"</span> <span class="c1"># (4)</span>
|
|
<span class="nt">INCLUDE_PAST_PERIODIC_SEGMENTS</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">FALSE</span>
|
|
|
|
<span class="nt">PHONE_DATA_STREAMS</span><span class="p">:</span>
|
|
<span class="nt">USE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">aware_csv</span> <span class="c1"># (5)</span>
|
|
|
|
<span class="nt">aware_csv</span><span class="p">:</span>
|
|
<span class="nt">FOLDER</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">data/external/aware_csv</span> <span class="c1"># (6)</span>
|
|
|
|
<span class="c1"># ... other irrelevant sections</span>
|
|
|
|
<span class="c1">############## PHONE ###########################################################</span>
|
|
<span class="c1">################################################################################</span>
|
|
|
|
<span class="c1"># ... other irrelevant sections</span>
|
|
|
|
<span class="c1"># Communication call features config, TYPES and FEATURES keys need to match</span>
|
|
<span class="nt">PHONE_CALLS</span><span class="p">:</span>
|
|
<span class="nt">CONTAINER</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">calls.csv</span> <span class="c1"># (7) </span>
|
|
<span class="nt">PROVIDERS</span><span class="p">:</span>
|
|
<span class="nt">RAPIDS</span><span class="p">:</span>
|
|
<span class="nt">COMPUTE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">True</span> <span class="c1"># (8)</span>
|
|
<span class="nt">CALL_TYPES</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">...</span>
|
|
</code></pre></div>
|
|
<ol>
|
|
<li>
|
|
<p>We added <code>p01</code> to PIDS after creating the participant file:
|
|
<div class="highlight"><pre><span></span><code>data/external/participant_files/p01.yaml
|
|
</code></pre></div></p>
|
|
<p>With the following content:
|
|
<div class="highlight"><pre><span></span><code><span class="nt">PHONE</span><span class="p">:</span>
|
|
<span class="nt">DEVICE_IDS</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="nv">a748ee1a-1d0b-4ae9-9074-279a2b6ba524</span><span class="p p-Indicator">]</span> <span class="c1"># the participant's AWARE device id</span>
|
|
<span class="nt">PLATFORMS</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="nv">android</span><span class="p p-Indicator">]</span> <span class="c1"># or ios</span>
|
|
<span class="nt">LABEL</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">MyTestP01</span> <span class="c1"># any string</span>
|
|
<span class="nt">START_DATE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">2020-01-01</span> <span class="c1"># this can also be empty</span>
|
|
<span class="nt">END_DATE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">2021-01-01</span> <span class="c1"># this can also be empty</span>
|
|
</code></pre></div></p>
|
|
</li>
|
|
<li>
|
|
<p>We use the default <code>SINGLE</code> time zone.</p>
|
|
</li>
|
|
<li>
|
|
<p>We use the default <code>PERIODIC</code> time segment <code>[TYPE]</code></p>
|
|
</li>
|
|
<li>
|
|
<p>We created this time segments file with these lines:</p>
|
|
<div class="highlight"><pre><span></span><code>label,start_time,length,repeats_on,repeats_value
|
|
daily,00:00:00,23H 59M 59S,every_day,0
|
|
night,001:00:00,5H 59M 59S,every_day,0
|
|
</code></pre></div>
|
|
</li>
|
|
<li>
|
|
<p>We set <code>[USE]</code> to <code>aware_device</code> to tell RAPIDS to process sensor data collected with the AWARE Framework stored in CSV files.</p>
|
|
</li>
|
|
<li>
|
|
<p>We used the default <code>[FOLDER]</code> for <code>awre_csv</code> since we already stored our test <code>calls.csv</code> file there</p>
|
|
</li>
|
|
<li>
|
|
<p>We changed <code>[CONTAINER]</code> to <code>calls.csv</code> to process our test call data.</p>
|
|
</li>
|
|
<li>
|
|
<p>We flipped <code>[COMPUTE]</code> to <code>True</code> to extract call behavioral features using the <code>RAPIDS</code> feature provider.</p>
|
|
</li>
|
|
</ol>
|
|
</div>
|
|
</li>
|
|
<li>
|
|
<p>Run RAPIDS
|
|
<div class="highlight"><pre><span></span><code>./rapids -j1
|
|
</code></pre></div></p>
|
|
</li>
|
|
<li>The call features for daily and morning time segments will be in
|
|
<div class="highlight"><pre><span></span><code>data/processed/features/all_participants/all_sensor_features.csv
|
|
</code></pre></div></li>
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</ol>
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