34 lines
1.1 KiB
Bash
Executable File
34 lines
1.1 KiB
Bash
Executable File
#!/bin/bash
|
|
# Commmands necessary to setup and run the tests for RAPIDS
|
|
|
|
echo Setting up for testing...
|
|
|
|
# Uncomment the section below if neccessary to remove old files when testing locally
|
|
# echo deleting old data...
|
|
# rm -rf data/raw/*
|
|
# rm -rf data/processed/*
|
|
# rm -rf data/interim/*
|
|
# rm -rf data/external/test*
|
|
|
|
echo Copying files...
|
|
cp -r tests/data/raw/* data/raw
|
|
cp tests/data/external/* data/external
|
|
|
|
# Uncomment the section below to backup snakemake file when testing locally
|
|
# echo Backing up preprocessing...
|
|
# cp rules/preprocessing.snakefile bak
|
|
|
|
echo Disabling downloading of dataset...
|
|
sed -e '10,20 s/^/#/' -e 's/rules.download_dataset.output/"data\/raw\/\{pid\}\/\{sensor\}_raw\.csv"/' rules/preprocessing.snakefile > tmp
|
|
cp tmp rules/preprocessing.snakefile
|
|
|
|
echo Running RAPIDS Pipeline on testdata...
|
|
snakemake --profile tests/settings
|
|
|
|
echo Running tests on data produced...
|
|
python -m unittest discover tests/scripts/ -v
|
|
|
|
# Uncomment to return snakemake back to the original version when testing locally
|
|
# echo Cleaning up...
|
|
# mv bak rules/preprocessing.snakefile
|
|
# rm tmp |