2034 lines
53 KiB
HTML
2034 lines
53 KiB
HTML
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<!doctype html>
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<html lang="en" class="no-js">
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<meta name="viewport" content="width=device-width,initial-scale=1">
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<link rel="canonical" href="https://www.rapids.science/1.5/features/feature-introduction/">
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<meta name="generator" content="mkdocs-1.2.2, mkdocs-material-7.1.6+insiders-2.9.1">
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<title>Introduction - RAPIDS</title>
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<style>:root{--md-text-font-family:"Roboto";--md-code-font-family:"Roboto Mono"}</style>
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<link rel="stylesheet" href="../../stylesheets/extra.css">
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</head>
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<body dir="ltr" data-md-color-scheme="default" data-md-color-primary="blue" data-md-color-accent="blue">
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<script>function __scope(t,e="../.."){return new URL(e,location).pathname+"."+t}function __get(t,e=localStorage,n){return JSON.parse(e.getItem(__scope(t,n)))}function __set(t,e,n=localStorage,o){try{n.setItem(__scope(t,o),JSON.stringify(e))}catch(t){}}</script>
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<input class="md-toggle" data-md-toggle="search" type="checkbox" id="__search" autocomplete="off">
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<label class="md-overlay" for="__drawer"></label>
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<div data-md-component="skip">
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<a href="#behavioral-features-introduction" class="md-skip">
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Skip to content
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<div data-md-component="outdated" hidden>
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<aside class="md-banner md-banner--warning">
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<div class="md-banner__inner md-grid md-typeset">
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You're not viewing the latest stable version of RAPIDS.
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<a href="https://rapids.science/latest">
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<strong> Click here to go to latest. </strong>
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<nav class="md-header__inner md-grid" aria-label="Header">
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<img src="../../img/logo.png" alt="logo">
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</a>
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<label class="md-header__button md-icon" for="__drawer">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M3 6h18v2H3V6m0 5h18v2H3v-2m0 5h18v2H3v-2z"/></svg>
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<div class="md-header__title" data-md-component="header-title">
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<div class="md-header__ellipsis">
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<div class="md-header__topic">
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<span class="md-ellipsis">
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RAPIDS
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<div class="md-header__topic" data-md-component="header-topic">
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<span class="md-ellipsis">
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Introduction
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<form class="md-header__option" data-md-component="palette">
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<label class="md-header__button md-icon" title="Switch to light mode" for="__palette_2" hidden>
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M17 7H7a5 5 0 0 0-5 5 5 5 0 0 0 5 5h10a5 5 0 0 0 5-5 5 5 0 0 0-5-5m0 8a3 3 0 0 1-3-3 3 3 0 0 1 3-3 3 3 0 0 1 3 3 3 3 0 0 1-3 3z"/></svg>
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<input class="md-option" data-md-color-media="" data-md-color-scheme="slate" data-md-color-primary="blue" data-md-color-accent="blue" type="radio" name="__palette" id="__palette_2">
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<label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
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</form>
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<label class="md-header__button md-icon" for="__search">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5z"/></svg>
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<div class="md-search" data-md-component="search" role="dialog">
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<label class="md-search__overlay" for="__search"></label>
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<div class="md-search__inner" role="search">
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<form class="md-search__form" name="search">
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<input type="text" class="md-search__input" name="query" aria-label="Search" placeholder="Search" autocapitalize="off" autocorrect="off" autocomplete="off" spellcheck="false" data-md-component="search-query" required>
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</button>
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</nav>
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<div class="md-search__suggest" data-md-component="search-suggest"></div>
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<div class="md-search__scrollwrap" data-md-scrollfix>
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<div class="md-search-result" data-md-component="search-result">
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<div class="md-search-result__meta">
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Initializing search
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</div>
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<ol class="md-search-result__list"></ol>
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</div>
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</div>
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</div>
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</div>
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<div class="md-header__source">
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<a href="https://github.com/carissalow/rapids/" title="Go to repository" class="md-source" data-md-component="source">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81z"/></svg>
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</div>
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<div class="md-source__repository">
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carissalow/rapids
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</div>
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</a>
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</div>
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</nav>
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</header>
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<div class="md-container" data-md-component="container">
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<main class="md-main" data-md-component="main">
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<div class="md-main__inner md-grid">
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<div class="md-sidebar md-sidebar--primary" data-md-component="sidebar" data-md-type="navigation" >
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<div class="md-sidebar__scrollwrap">
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<div class="md-sidebar__inner">
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<nav class="md-nav md-nav--primary" aria-label="Navigation" data-md-level="0">
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<label class="md-nav__title" for="__drawer">
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<a href="../.." title="RAPIDS" class="md-nav__button md-logo" aria-label="RAPIDS" data-md-component="logo">
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<img src="../../img/logo.png" alt="logo">
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</a>
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RAPIDS
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</label>
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<div class="md-nav__source">
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<a href="https://github.com/carissalow/rapids/" title="Go to repository" class="md-source" data-md-component="source">
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<div class="md-source__icon md-icon">
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81z"/></svg>
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</div>
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<div class="md-source__repository">
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carissalow/rapids
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</div>
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</a>
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</div>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../.." class="md-nav__link">
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Home
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</a>
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<li class="md-nav__item">
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<a href="../../setup/overview/" class="md-nav__link">
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Overview
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../workflow-examples/minimal/" class="md-nav__link">
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Minimal Example
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../citation/" class="md-nav__link">
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Citation
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</a>
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<li class="md-nav__item">
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<a href="../../contributing/" class="md-nav__link">
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Contributing
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</a>
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</li>
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_6" type="checkbox" id="__nav_6" >
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<label class="md-nav__link" for="__nav_6">
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Setup
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Setup" data-md-level="1">
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<label class="md-nav__title" for="__nav_6">
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<span class="md-nav__icon md-icon"></span>
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Setup
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../../setup/installation/" class="md-nav__link">
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Installation
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../setup/configuration/" class="md-nav__link">
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Configuration
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../setup/execution/" class="md-nav__link">
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Execution
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</a>
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</li>
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</ul>
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</nav>
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_7" type="checkbox" id="__nav_7" >
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<label class="md-nav__link" for="__nav_7">
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Data Streams
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Data Streams" data-md-level="1">
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<label class="md-nav__title" for="__nav_7">
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<span class="md-nav__icon md-icon"></span>
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Data Streams
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../../datastreams/data-streams-introduction/" class="md-nav__link">
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Introduction
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</a>
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</li>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_7_2" type="checkbox" id="__nav_7_2" >
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<label class="md-nav__link" for="__nav_7_2">
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Phone
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<span class="md-nav__icon md-icon"></span>
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</label>
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<nav class="md-nav" aria-label="Phone" data-md-level="2">
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<label class="md-nav__title" for="__nav_7_2">
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<span class="md-nav__icon md-icon"></span>
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Phone
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</label>
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
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<a href="../../datastreams/aware-mysql/" class="md-nav__link">
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aware_mysql
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../datastreams/aware-csv/" class="md-nav__link">
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aware_csv
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../datastreams/aware-influxdb/" class="md-nav__link">
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aware_influxdb (beta)
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../datastreams/mandatory-phone-format/" class="md-nav__link">
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Mandatory Phone Format
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</a>
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</li>
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</ul>
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_7_3" type="checkbox" id="__nav_7_3" >
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<label class="md-nav__link" for="__nav_7_3">
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Fitbit
|
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<span class="md-nav__icon md-icon"></span>
|
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</label>
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|
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<nav class="md-nav" aria-label="Fitbit" data-md-level="2">
|
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<label class="md-nav__title" for="__nav_7_3">
|
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<span class="md-nav__icon md-icon"></span>
|
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Fitbit
|
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</label>
|
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
|
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<a href="../../datastreams/fitbitjson-mysql/" class="md-nav__link">
|
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fitbitjson_mysql
|
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</a>
|
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</li>
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<li class="md-nav__item">
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<a href="../../datastreams/fitbitjson-csv/" class="md-nav__link">
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fitbitjson_csv
|
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../datastreams/fitbitparsed-mysql/" class="md-nav__link">
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fitbitparsed_mysql
|
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</a>
|
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</li>
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<li class="md-nav__item">
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<a href="../../datastreams/fitbitparsed-csv/" class="md-nav__link">
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fitbitparsed_csv
|
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</a>
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</li>
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<li class="md-nav__item">
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<a href="../../datastreams/mandatory-fitbit-format/" class="md-nav__link">
|
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Mandatory Fitbit Format
|
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</a>
|
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</li>
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</ul>
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_7_4" type="checkbox" id="__nav_7_4" >
|
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<label class="md-nav__link" for="__nav_7_4">
|
|
Empatica
|
|
<span class="md-nav__icon md-icon"></span>
|
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</label>
|
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|
|
<nav class="md-nav" aria-label="Empatica" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_7_4">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Empatica
|
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</label>
|
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<ul class="md-nav__list" data-md-scrollfix>
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<li class="md-nav__item">
|
|
<a href="../../datastreams/empatica-zip/" class="md-nav__link">
|
|
empatica_zip
|
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</a>
|
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</li>
|
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<li class="md-nav__item">
|
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<a href="../../datastreams/mandatory-empatica-format/" class="md-nav__link">
|
|
Mandatory Empatica Format
|
|
</a>
|
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</li>
|
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|
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</ul>
|
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</nav>
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</li>
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<li class="md-nav__item">
|
|
<a href="../../datastreams/add-new-data-streams/" class="md-nav__link">
|
|
Add New Data Streams
|
|
</a>
|
|
</li>
|
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</ul>
|
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--active md-nav__item--section md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_8" type="checkbox" id="__nav_8" checked>
|
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|
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<label class="md-nav__link" for="__nav_8">
|
|
Behavioral Features
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
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|
|
<nav class="md-nav" aria-label="Behavioral Features" data-md-level="1">
|
|
<label class="md-nav__title" for="__nav_8">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Behavioral Features
|
|
</label>
|
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<ul class="md-nav__list" data-md-scrollfix>
|
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<li class="md-nav__item md-nav__item--active">
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<input class="md-nav__toggle md-toggle" data-md-toggle="toc" type="checkbox" id="__toc">
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<label class="md-nav__link md-nav__link--active" for="__toc">
|
|
Introduction
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<a href="./" class="md-nav__link md-nav__link--active">
|
|
Introduction
|
|
</a>
|
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|
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<nav class="md-nav md-nav--secondary" aria-label="Table of contents">
|
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<label class="md-nav__title" for="__toc">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Table of contents
|
|
</label>
|
|
<ul class="md-nav__list" data-md-component="toc" data-md-scrollfix>
|
|
|
|
<li class="md-nav__item">
|
|
<a href="#explaining-the-configyaml-sensor-sections-with-an-example" class="md-nav__link">
|
|
Explaining the config.yaml sensor sections with an example
|
|
</a>
|
|
|
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</li>
|
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|
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</ul>
|
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|
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</nav>
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</li>
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<li class="md-nav__item md-nav__item--nested">
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_8_2" type="checkbox" id="__nav_8_2" >
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<label class="md-nav__link" for="__nav_8_2">
|
|
Phone
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
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|
|
<nav class="md-nav" aria-label="Phone" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_8_2">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Phone
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
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|
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|
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<li class="md-nav__item">
|
|
<a href="../phone-accelerometer/" class="md-nav__link">
|
|
Phone Accelerometer
|
|
</a>
|
|
</li>
|
|
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<li class="md-nav__item">
|
|
<a href="../phone-activity-recognition/" class="md-nav__link">
|
|
Phone Activity Recognition
|
|
</a>
|
|
</li>
|
|
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<li class="md-nav__item">
|
|
<a href="../phone-applications-crashes/" class="md-nav__link">
|
|
Phone Applications Crashes
|
|
</a>
|
|
</li>
|
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<li class="md-nav__item">
|
|
<a href="../phone-applications-foreground/" class="md-nav__link">
|
|
Phone Applications Foreground
|
|
</a>
|
|
</li>
|
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<li class="md-nav__item">
|
|
<a href="../phone-applications-notifications/" class="md-nav__link">
|
|
Phone Applications Notifications
|
|
</a>
|
|
</li>
|
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<li class="md-nav__item">
|
|
<a href="../phone-battery/" class="md-nav__link">
|
|
Phone Battery
|
|
</a>
|
|
</li>
|
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<li class="md-nav__item">
|
|
<a href="../phone-bluetooth/" class="md-nav__link">
|
|
Phone Bluetooth
|
|
</a>
|
|
</li>
|
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<li class="md-nav__item">
|
|
<a href="../phone-calls/" class="md-nav__link">
|
|
Phone Calls
|
|
</a>
|
|
</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="../phone-conversation/" class="md-nav__link">
|
|
Phone Conversation
|
|
</a>
|
|
</li>
|
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<li class="md-nav__item">
|
|
<a href="../phone-data-yield/" class="md-nav__link">
|
|
Phone Data Yield
|
|
</a>
|
|
</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="../phone-keyboard/" class="md-nav__link">
|
|
Phone Keyboard
|
|
</a>
|
|
</li>
|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-light/" class="md-nav__link">
|
|
Phone Light
|
|
</a>
|
|
</li>
|
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|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-locations/" class="md-nav__link">
|
|
Phone Locations
|
|
</a>
|
|
</li>
|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-log/" class="md-nav__link">
|
|
Phone Log
|
|
</a>
|
|
</li>
|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-messages/" class="md-nav__link">
|
|
Phone Messages
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-screen/" class="md-nav__link">
|
|
Phone Screen
|
|
</a>
|
|
</li>
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-wifi-connected/" class="md-nav__link">
|
|
Phone WiFI Connected
|
|
</a>
|
|
</li>
|
|
|
|
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|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-wifi-visible/" class="md-nav__link">
|
|
Phone WiFI Visible
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
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|
|
<li class="md-nav__item md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_8_3" type="checkbox" id="__nav_8_3" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_8_3">
|
|
Fitbit
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Fitbit" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_8_3">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Fitbit
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-calories-intraday/" class="md-nav__link">
|
|
Fitbit Calories Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
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|
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|
|
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|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-data-yield/" class="md-nav__link">
|
|
Fitbit Data Yield
|
|
</a>
|
|
</li>
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-heartrate-summary/" class="md-nav__link">
|
|
Fitbit Heart Rate Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-heartrate-intraday/" class="md-nav__link">
|
|
Fitbit Heart Rate Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-sleep-summary/" class="md-nav__link">
|
|
Fitbit Sleep Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-sleep-intraday/" class="md-nav__link">
|
|
Fitbit Sleep Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-steps-summary/" class="md-nav__link">
|
|
Fitbit Steps Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-steps-intraday/" class="md-nav__link">
|
|
Fitbit Steps Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
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|
|
|
|
|
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|
|
<li class="md-nav__item md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_8_4" type="checkbox" id="__nav_8_4" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_8_4">
|
|
Empatica
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Empatica" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_8_4">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Empatica
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../empatica-accelerometer/" class="md-nav__link">
|
|
Empatica Accelerometer
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../empatica-heartrate/" class="md-nav__link">
|
|
Empatica Heart Rate
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../empatica-temperature/" class="md-nav__link">
|
|
Empatica Temperature
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../empatica-electrodermal-activity/" class="md-nav__link">
|
|
Empatica Electrodermal Activity
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
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<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20.71 7.04c.39-.39.39-1.04 0-1.41l-2.34-2.34c-.37-.39-1.02-.39-1.41 0l-1.84 1.83 3.75 3.75M3 17.25V21h3.75L17.81 9.93l-3.75-3.75L3 17.25z"/></svg>
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<h1 id="behavioral-features-introduction">Behavioral Features Introduction<a class="headerlink" href="#behavioral-features-introduction" title="Permanent link">¶</a></h1>
|
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<p>A behavioral feature is a metric computed from raw sensor data quantifying the behavior of a participant. For example, the time spent at home computed based on location data. These are also known as digital biomarkers. </p>
|
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<p>RAPIDS’ <code>config.yaml</code> has a section for each supported device/sensor (e.g., <code>PHONE_ACCELEROMETER</code>, <code>FITBIT_STEPS</code>, <code>EMPATICA_HEARTRATE</code>). These sections follow a similar structure, and they can have one or more feature <code>PROVIDERS</code>, that compute one or more behavioral features. You will modify the parameters of these <code>PROVIDERS</code> to obtain features from different mobile sensors. We’ll use <code>PHONE_ACCELEROMETER</code> as an example to explain this further.</p>
|
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<div class="admonition hint">
|
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<p class="admonition-title">Hint</p>
|
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<ul>
|
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<li>We recommend reading this page if you are using RAPIDS for the first time</li>
|
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<li>All computed sensor features are stored under <code>/data/processed/features</code> on files per sensor, per participant and per study (all participants).</li>
|
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<li>Every time you change any sensor parameters, provider parameters or provider features, all the necessary files will be updated as soon as you execute RAPIDS.</li>
|
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<li>In short, to extract features offered by a provider, you need to set its <code>[COMPUTE]</code> flag to <code>TRUE</code>, configure any of its parameters, and <a href="../../setup/execution">execute</a> RAPIDS.</li>
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</ul>
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</div>
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<h3 id="explaining-the-configyaml-sensor-sections-with-an-example">Explaining the config.yaml sensor sections with an example<a class="headerlink" href="#explaining-the-configyaml-sensor-sections-with-an-example" title="Permanent link">¶</a></h3>
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<p>Each sensor section follows the same structure. Click on the numbered markers to know more.</p>
|
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<div class="annotate highlight"><pre><span></span><code><span class="nt">PHONE_ACCELEROMETER</span><span class="p">:</span> <span class="c1"># (1)</span>
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<span class="nt">CONTAINER</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">accelerometer</span> <span class="c1"># (2)</span>
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<span class="nt">PROVIDERS</span><span class="p">:</span> <span class="c1"># (3)</span>
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<span class="nt">RAPIDS</span><span class="p">:</span>
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<span class="nt">COMPUTE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">False</span> <span class="c1"># (4)</span>
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<span class="nt">FEATURES</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="s">"maxmagnitude"</span><span class="p p-Indicator">,</span> <span class="s">"minmagnitude"</span><span class="p p-Indicator">,</span> <span class="s">"avgmagnitude"</span><span class="p p-Indicator">,</span> <span class="s">"medianmagnitude"</span><span class="p p-Indicator">,</span> <span class="s">"stdmagnitude"</span><span class="p p-Indicator">]</span>
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<span class="nt">SRC_SCRIPT</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">src/features/phone_accelerometer/rapids/main.py</span>
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<span class="nt">PANDA</span><span class="p">:</span>
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<span class="nt">COMPUTE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">False</span>
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<span class="nt">VALID_SENSED_MINUTES</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">False</span>
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<span class="nt">FEATURES</span><span class="p">:</span> <span class="c1"># (5)</span>
|
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<span class="nt">exertional_activity_episode</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="s">"sumduration"</span><span class="p p-Indicator">,</span> <span class="s">"maxduration"</span><span class="p p-Indicator">,</span> <span class="s">"minduration"</span><span class="p p-Indicator">,</span> <span class="s">"avgduration"</span><span class="p p-Indicator">,</span> <span class="s">"medianduration"</span><span class="p p-Indicator">,</span> <span class="s">"stdduration"</span><span class="p p-Indicator">]</span>
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<span class="nt">nonexertional_activity_episode</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="s">"sumduration"</span><span class="p p-Indicator">,</span> <span class="s">"maxduration"</span><span class="p p-Indicator">,</span> <span class="s">"minduration"</span><span class="p p-Indicator">,</span> <span class="s">"avgduration"</span><span class="p p-Indicator">,</span> <span class="s">"medianduration"</span><span class="p p-Indicator">,</span> <span class="s">"stdduration"</span><span class="p p-Indicator">]</span>
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<span class="c1"># (6)</span>
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<span class="nt">SRC_SCRIPT</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">src/features/phone_accelerometer/panda/main.py</span>
|
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</code></pre></div>
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<ol>
|
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<li>
|
|
<p><strong>Sensor section</strong></p>
|
|
<p>Each sensor (accelerometer, screen, etc.) of every supported device (smartphone, Fitbit, etc.) has a section in the <code>config.yaml</code> with <code>parameters</code> and feature <code>PROVIDERS</code>.</p>
|
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</li>
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<li>
|
|
<p><strong>Sensor Parameters.</strong> </p>
|
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<p>Each sensor section has one or more parameters. These are parameters that affect different aspects of how the raw data is pulled, and processed.</p>
|
|
<p>The <code>CONTAINER</code> parameter exists for every sensor, but some sensors will have extra parameters like <a href="../phone-locations/"><code>[PHONE_LOCATIONS]</code></a>.</p>
|
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<p>We explain these parameters in a table at the top of each sensor documentation page.</p>
|
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</li>
|
|
<li>
|
|
<p><strong>Sensor Providers</strong></p>
|
|
<p>Each object in this list represents a feature <code>PROVIDER</code>. Each sensor can have zero, one, or more providers.</p>
|
|
<p>A <code>PROVIDER</code> is a script that creates behavioral features for a specific sensor. Providers are created by the core RAPIDS team or by the community, which are named after its first author like <a href="../../features/phone-locations/#doryab-provider">[PHONE_LOCATIONS][DORYAB]</a>.</p>
|
|
<p>In this example, there are two accelerometer feature providers <code>RAPIDS</code> and <code>PANDA</code>.</p>
|
|
</li>
|
|
<li>
|
|
<p><strong><code>PROVIDER</code> Parameters</strong></p>
|
|
<p>Each <code>PROVIDER</code> has parameters that affect the computation of the behavioral features it offers.</p>
|
|
<p>These parameters include at least a <code>[COMPUTE]</code> flag that you switch to <code>True</code> to extract a provider’s behavioral features. </p>
|
|
<p>We explain every provider’s parameter in a table under the <code>Parameters description</code> heading on each provider documentation page.</p>
|
|
</li>
|
|
<li>
|
|
<p><strong><code>PROVIDER</code> Features</strong></p>
|
|
<p>Each <code>PROVIDER</code> offers a set of behavioral features.</p>
|
|
<p>These features are grouped in an array for some providers, like those for <code>RAPIDS</code> provider. For others, they are grouped in a collection of arrays, like those for <code>PANDAS</code> provider.</p>
|
|
<p>In either case, you can delete the features you are not interested in, and they will not be included in the sensor’s output feature file. </p>
|
|
<p>We explain each behavioral feature in a table under the <code>Features description</code> heading on each provider documentation page.</p>
|
|
</li>
|
|
<li>
|
|
<p><strong><code>PROVIDER</code> script</strong></p>
|
|
<p>Each <code>PROVIDER</code> has a <code>SRC_SCRIPT</code> that points to the script implementing its behavioral features.</p>
|
|
<p>It has to be a relative path from RAPIDS’ root folder and the script’s parent folder should be named after the provider, e.g. <code>panda</code>.</p>
|
|
</li>
|
|
</ol>
|
|
<p>These are the descriptions of each marker for accessibility:</p>
|
|
<ol>
|
|
<li>
|
|
<p><strong>Sensor section</strong></p>
|
|
<p>Each sensor (accelerometer, screen, etc.) of every supported device (smartphone, Fitbit, etc.) has a section in the <code>config.yaml</code> with <code>parameters</code> and feature <code>PROVIDERS</code>.</p>
|
|
</li>
|
|
<li>
|
|
<p><strong>Sensor Parameters.</strong> </p>
|
|
<p>Each sensor section has one or more parameters. These are parameters that affect different aspects of how the raw data is pulled, and processed.</p>
|
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<p>The <code>CONTAINER</code> parameter exists for every sensor, but some sensors will have extra parameters like <a href="../phone-locations/"><code>[PHONE_LOCATIONS]</code></a>.</p>
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<p>We explain these parameters in a table at the top of each sensor documentation page.</p>
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</li>
|
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<li>
|
|
<p><strong>Sensor Providers</strong></p>
|
|
<p>Each object in this list represents a feature <code>PROVIDER</code>. Each sensor can have zero, one, or more providers.</p>
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|
<p>A <code>PROVIDER</code> is a script that creates behavioral features for a specific sensor. Providers are created by the core RAPIDS team or by the community, which are named after its first author like <a href="../../features/phone-locations/#doryab-provider">[PHONE_LOCATIONS][DORYAB]</a>.</p>
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<p>In this example, there are two accelerometer feature providers <code>RAPIDS</code> and <code>PANDA</code>.</p>
|
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</li>
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<li>
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<p><strong><code>PROVIDER</code> Parameters</strong></p>
|
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<p>Each <code>PROVIDER</code> has parameters that affect the computation of the behavioral features it offers.</p>
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<p>These parameters include at least a <code>[COMPUTE]</code> flag that you switch to <code>True</code> to extract a provider’s behavioral features. </p>
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<p>We explain every provider’s parameter in a table under the <code>Parameters description</code> heading on each provider documentation page.</p>
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</li>
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<li>
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<p><strong><code>PROVIDER</code> Features</strong></p>
|
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<p>Each <code>PROVIDER</code> offers a set of behavioral features.</p>
|
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<p>These features are grouped in an array for some providers, like those for <code>RAPIDS</code> provider. For others, they are grouped in a collection of arrays, like those for <code>PANDAS</code> provider.</p>
|
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<p>In either case, you can delete the features you are not interested in, and they will not be included in the sensor’s output feature file. </p>
|
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<p>We explain each behavioral feature in a table under the <code>Features description</code> heading on each provider documentation page.</p>
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</li>
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<li>
|
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<p><strong><code>PROVIDER</code> script</strong></p>
|
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<p>Each <code>PROVIDER</code> has a <code>SRC_SCRIPT</code> that points to the script implementing its behavioral features.</p>
|
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<p>It has to be a relative path from RAPIDS’ root folder and the script’s parent folder should be named after the provider, e.g. <code>panda</code>.</p>
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</li>
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