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</ul>
|
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</nav>
|
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</li>
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<li class="md-nav__item md-nav__item--active md-nav__item--section md-nav__item--nested">
|
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|
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4" type="checkbox" id="__nav_4" checked>
|
|
|
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|
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<label class="md-nav__link" for="__nav_4">
|
|
Behavioral Features
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Behavioral Features" data-md-level="1">
|
|
<label class="md-nav__title" for="__nav_4">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Behavioral Features
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
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<li class="md-nav__item md-nav__item--active">
|
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|
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<input class="md-nav__toggle md-toggle" data-md-toggle="toc" type="checkbox" id="__toc">
|
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|
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<label class="md-nav__link md-nav__link--active" for="__toc">
|
|
Introduction
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
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<a href="./" class="md-nav__link md-nav__link--active">
|
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Introduction
|
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</a>
|
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|
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<nav class="md-nav md-nav--secondary" aria-label="Table of contents">
|
|
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|
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|
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|
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<label class="md-nav__title" for="__toc">
|
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<span class="md-nav__icon md-icon"></span>
|
|
Table of contents
|
|
</label>
|
|
<ul class="md-nav__list" data-md-component="toc" data-md-scrollfix>
|
|
|
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<li class="md-nav__item">
|
|
<a href="#sensor-parameters" class="md-nav__link">
|
|
Sensor Parameters
|
|
</a>
|
|
|
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</li>
|
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|
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<li class="md-nav__item">
|
|
<a href="#sensor-providers" class="md-nav__link">
|
|
Sensor Providers
|
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</a>
|
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|
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<nav class="md-nav" aria-label="Sensor Providers">
|
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<ul class="md-nav__list">
|
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|
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<li class="md-nav__item">
|
|
<a href="#provider-parameters" class="md-nav__link">
|
|
Provider Parameters
|
|
</a>
|
|
|
|
</li>
|
|
|
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<li class="md-nav__item">
|
|
<a href="#provider-features" class="md-nav__link">
|
|
Provider Features
|
|
</a>
|
|
|
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</li>
|
|
|
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</ul>
|
|
</nav>
|
|
|
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</li>
|
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|
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</ul>
|
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|
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</nav>
|
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</li>
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<li class="md-nav__item md-nav__item--nested">
|
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|
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<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4_2" type="checkbox" id="__nav_4_2" >
|
|
|
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|
|
|
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|
|
<label class="md-nav__link" for="__nav_4_2">
|
|
Phone
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Phone" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_4_2">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Phone
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
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|
|
|
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|
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<li class="md-nav__item">
|
|
<a href="../phone-accelerometer/" class="md-nav__link">
|
|
Phone Accelerometer
|
|
</a>
|
|
</li>
|
|
|
|
|
|
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|
|
|
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|
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|
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|
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<li class="md-nav__item">
|
|
<a href="../phone-activity-recognition/" class="md-nav__link">
|
|
Phone Activity Recognition
|
|
</a>
|
|
</li>
|
|
|
|
|
|
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|
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|
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<li class="md-nav__item">
|
|
<a href="../phone-applications-foreground/" class="md-nav__link">
|
|
Phone Applications Foreground
|
|
</a>
|
|
</li>
|
|
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|
|
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|
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<li class="md-nav__item">
|
|
<a href="../phone-battery/" class="md-nav__link">
|
|
Phone Battery
|
|
</a>
|
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</li>
|
|
|
|
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|
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<li class="md-nav__item">
|
|
<a href="../phone-bluetooth/" class="md-nav__link">
|
|
Phone Bluetooth
|
|
</a>
|
|
</li>
|
|
|
|
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|
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<li class="md-nav__item">
|
|
<a href="../phone-calls/" class="md-nav__link">
|
|
Phone Calls
|
|
</a>
|
|
</li>
|
|
|
|
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|
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<li class="md-nav__item">
|
|
<a href="../phone-conversation/" class="md-nav__link">
|
|
Phone Conversation
|
|
</a>
|
|
</li>
|
|
|
|
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|
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|
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<li class="md-nav__item">
|
|
<a href="../phone-data-yield/" class="md-nav__link">
|
|
Phone Data Yield
|
|
</a>
|
|
</li>
|
|
|
|
|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-light/" class="md-nav__link">
|
|
Phone Light
|
|
</a>
|
|
</li>
|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-locations/" class="md-nav__link">
|
|
Phone Locations
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-messages/" class="md-nav__link">
|
|
Phone Messages
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-screen/" class="md-nav__link">
|
|
Phone Screen
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-wifi-connected/" class="md-nav__link">
|
|
Phone WiFI Connected
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../phone-wifi-visible/" class="md-nav__link">
|
|
Phone WiFI Visible
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
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|
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<li class="md-nav__item md-nav__item--nested">
|
|
|
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|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_4_3" type="checkbox" id="__nav_4_3" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_4_3">
|
|
Fitbit
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Fitbit" data-md-level="2">
|
|
<label class="md-nav__title" for="__nav_4_3">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Fitbit
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-heartrate-summary/" class="md-nav__link">
|
|
Fitbit Heart Rate Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-heartrate-intraday/" class="md-nav__link">
|
|
Fitbit Heart Rate Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-sleep-summary/" class="md-nav__link">
|
|
Fitbit Sleep Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-steps-summary/" class="md-nav__link">
|
|
Fitbit Steps Summary
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../fitbit-steps-intraday/" class="md-nav__link">
|
|
Fitbit Steps Intraday
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../add-new-features/" class="md-nav__link">
|
|
Add New Features
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
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|
|
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_5" type="checkbox" id="__nav_5" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_5">
|
|
Visualizations
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Visualizations" data-md-level="1">
|
|
<label class="md-nav__title" for="__nav_5">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Visualizations
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../visualizations/data-quality-visualizations/" class="md-nav__link">
|
|
Data Quality
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../visualizations/feature-visualizations/" class="md-nav__link">
|
|
Features
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
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</li>
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|
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<li class="md-nav__item md-nav__item--section md-nav__item--nested">
|
|
|
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|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_6" type="checkbox" id="__nav_6" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_6">
|
|
Developers
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Developers" data-md-level="1">
|
|
<label class="md-nav__title" for="__nav_6">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Developers
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../developers/remote-support/" class="md-nav__link">
|
|
Remote Support
|
|
</a>
|
|
</li>
|
|
|
|
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|
|
|
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|
|
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|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../developers/virtual-environments/" class="md-nav__link">
|
|
Virtual Environments
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../developers/documentation/" class="md-nav__link">
|
|
Documentation
|
|
</a>
|
|
</li>
|
|
|
|
|
|
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|
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|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../../developers/testing/" class="md-nav__link">
|
|
Testing
|
|
</a>
|
|
</li>
|
|
|
|
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|
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|
|
|
|
|
|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../developers/test-cases/" class="md-nav__link">
|
|
Test cases
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
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|
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|
|
<li class="md-nav__item md-nav__item--section md-nav__item--nested">
|
|
|
|
|
|
<input class="md-nav__toggle md-toggle" data-md-toggle="__nav_7" type="checkbox" id="__nav_7" >
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__link" for="__nav_7">
|
|
Others
|
|
<span class="md-nav__icon md-icon"></span>
|
|
</label>
|
|
|
|
<nav class="md-nav" aria-label="Others" data-md-level="1">
|
|
<label class="md-nav__title" for="__nav_7">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Others
|
|
</label>
|
|
<ul class="md-nav__list" data-md-scrollfix>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<li class="md-nav__item">
|
|
<a href="../../migrating-from-old-versions/" class="md-nav__link">
|
|
Migrating from beta
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../code_of_conduct/" class="md-nav__link">
|
|
Code of Conduct
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
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|
|
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|
|
<li class="md-nav__item">
|
|
<a href="../../faq/" class="md-nav__link">
|
|
FAQ
|
|
</a>
|
|
</li>
|
|
|
|
|
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|
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|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../../team/" class="md-nav__link">
|
|
Team
|
|
</a>
|
|
</li>
|
|
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|
|
|
|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../../change-log/" class="md-nav__link">
|
|
Change Log
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
<li class="md-nav__item">
|
|
<a href="../../citation/" class="md-nav__link">
|
|
Citation
|
|
</a>
|
|
</li>
|
|
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</li>
|
|
|
|
|
|
|
|
</ul>
|
|
</nav>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
|
|
|
|
<div class="md-sidebar md-sidebar--secondary" data-md-component="sidebar" data-md-type="toc" >
|
|
<div class="md-sidebar__scrollwrap">
|
|
<div class="md-sidebar__inner">
|
|
|
|
<nav class="md-nav md-nav--secondary" aria-label="Table of contents">
|
|
|
|
|
|
|
|
|
|
|
|
<label class="md-nav__title" for="__toc">
|
|
<span class="md-nav__icon md-icon"></span>
|
|
Table of contents
|
|
</label>
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Provider Features
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<h1 id="behavioral-features-introduction">Behavioral Features Introduction<a class="headerlink" href="#behavioral-features-introduction" title="Permanent link">¶</a></h1>
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<p>Every phone or Fitbit sensor has a corresponding config section in <code>config.yaml</code>, these sections follow a similar structure and we’ll use <code>PHONE_ACCELEROMETER</code> as an example to explain this structure.</p>
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<div class="admonition hint">
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<p class="admonition-title">Hint</p>
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<ul>
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<li>We recommend reading this page if you are using RAPIDS for the first time</li>
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<li>All computed sensor features are stored under <code>/data/processed/features</code> on files per sensor, per participant and per study (all participants).</li>
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<li>Every time you change any sensor parameters, provider parameters or provider features, all the necessary files will be updated as soon as you execute RAPIDS.</li>
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</ul>
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<div class="admonition example">
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<p class="admonition-title">Config section example for <code>PHONE_ACCELEROMETER</code></p>
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<div class="highlight"><pre><span></span><code><span class="c1"># 1) Config section</span>
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<span class="nt">PHONE_ACCELEROMETER</span><span class="p">:</span>
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<span class="c1"># 2) Parameters for PHONE_ACCELEROMETER</span>
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<span class="nt">TABLE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">accelerometer</span>
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<span class="c1"># 3) Providers for PHONE_ACCELEROMETER</span>
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<span class="nt">PROVIDERS</span><span class="p">:</span>
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<span class="c1"># 4) RAPIDS provider</span>
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<span class="nt">RAPIDS</span><span class="p">:</span>
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<span class="c1"># 4.1) Parameters of RAPIDS provider of PHONE_ACCELEROMETER</span>
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<span class="nt">COMPUTE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">False</span>
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<span class="c1"># 4.2) Features of RAPIDS provider of PHONE_ACCELEROMETER</span>
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<span class="nt">FEATURES</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="s">"maxmagnitude"</span><span class="p p-Indicator">,</span> <span class="s">"minmagnitude"</span><span class="p p-Indicator">,</span> <span class="s">"avgmagnitude"</span><span class="p p-Indicator">,</span> <span class="s">"medianmagnitude"</span><span class="p p-Indicator">,</span> <span class="s">"stdmagnitude"</span><span class="p p-Indicator">]</span>
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<span class="nt">SRC_FOLDER</span><span class="p">:</span> <span class="s">"rapids"</span> <span class="c1"># inside src/features/phone_accelerometer</span>
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<span class="nt">SRC_LANGUAGE</span><span class="p">:</span> <span class="s">"python"</span>
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<span class="c1"># 5) PANDA provider</span>
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<span class="nt">PANDA</span><span class="p">:</span>
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<span class="c1"># 5.1) Parameters of PANDA provider of PHONE_ACCELEROMETER</span>
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<span class="nt">COMPUTE</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">False</span>
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<span class="nt">VALID_SENSED_MINUTES</span><span class="p">:</span> <span class="l l-Scalar l-Scalar-Plain">False</span>
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<span class="c1"># 5.2) Features of PANDA provider of PHONE_ACCELEROMETER</span>
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<span class="nt">FEATURES</span><span class="p">:</span>
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<span class="nt">exertional_activity_episode</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="s">"sumduration"</span><span class="p p-Indicator">,</span> <span class="s">"maxduration"</span><span class="p p-Indicator">,</span> <span class="s">"minduration"</span><span class="p p-Indicator">,</span> <span class="s">"avgduration"</span><span class="p p-Indicator">,</span> <span class="s">"medianduration"</span><span class="p p-Indicator">,</span> <span class="s">"stdduration"</span><span class="p p-Indicator">]</span>
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<span class="nt">nonexertional_activity_episode</span><span class="p">:</span> <span class="p p-Indicator">[</span><span class="s">"sumduration"</span><span class="p p-Indicator">,</span> <span class="s">"maxduration"</span><span class="p p-Indicator">,</span> <span class="s">"minduration"</span><span class="p p-Indicator">,</span> <span class="s">"avgduration"</span><span class="p p-Indicator">,</span> <span class="s">"medianduration"</span><span class="p p-Indicator">,</span> <span class="s">"stdduration"</span><span class="p p-Indicator">]</span>
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<span class="nt">SRC_FOLDER</span><span class="p">:</span> <span class="s">"panda"</span> <span class="c1"># inside src/features/phone_accelerometer</span>
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<span class="nt">SRC_LANGUAGE</span><span class="p">:</span> <span class="s">"python"</span>
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</code></pre></div>
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</div>
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<h2 id="sensor-parameters">Sensor Parameters<a class="headerlink" href="#sensor-parameters" title="Permanent link">¶</a></h2>
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<p>Each sensor configuration section has a “parameters” subsection (see <code>#2</code> in the example). These are parameters that affect different aspects of how the raw data is downloaded, and processed. The <code>TABLE</code> parameter exists for every sensor, but some sensors will have extra parameters like <a href="../phone-locations/"><code>[PHONE_LOCATIONS]</code></a>. We explain these parameters in a table at the top of each sensor documentation page.</p>
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<h2 id="sensor-providers">Sensor Providers<a class="headerlink" href="#sensor-providers" title="Permanent link">¶</a></h2>
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<p>Each sensor configuration section can have zero, one or more behavioral feature <strong>providers</strong> (see <code>#3</code> in the example). A provider is a script created by the core RAPIDS team or other researchers that extracts behavioral features for that sensor. In this example, accelerometer has two providers: RAPIDS (see <code>#4</code>) and PANDA (see <code>#5</code>).</p>
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<h3 id="provider-parameters">Provider Parameters<a class="headerlink" href="#provider-parameters" title="Permanent link">¶</a></h3>
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<p>Each provider has parameters that affect the computation of the behavioral features it offers (see <code>#4.1</code> or <code>#5.1</code> in the example). These parameters will include at least a <code>[COMPUTE]</code> flag that you switch to <code>True</code> to extract a provider’s behavioral features. </p>
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<p>We explain every provider’s parameter in a table under the <code>Parameters description</code> heading on each provider documentation page.</p>
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<h3 id="provider-features">Provider Features<a class="headerlink" href="#provider-features" title="Permanent link">¶</a></h3>
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<p>Each provider offers a set of behavioral features (see <code>#4.2</code> or <code>#5.2</code> in the example). For some providers these features are grouped in an array (like those for <code>RAPIDS</code> provider in <code>#4.2</code>) but for others they are grouped in a collection of arrays depending on the meaning and purpose of those features (like those for <code>PANDAS</code> provider in <code>#5.2</code>). In either case, you can delete the features you are not interested in and they will not be included in the sensor’s output feature file. </p>
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<p>We explain each behavioral feature in a table under the <code>Features description</code> heading on each provider documentation page.</p>
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