# Features.smk ######################################################################################################### def find_features_files(wildcards): feature_files = [] for provider_key, provider in config[(wildcards.sensor_key).upper()]["PROVIDERS"].items(): if provider["COMPUTE"]: feature_files.extend(expand("data/interim/{{pid}}/{sensor_key}_features/{sensor_key}_{language}_{provider_key}.csv", sensor_key=wildcards.sensor_key.lower(), language=provider["SRC_LANGUAGE"].lower(), provider_key=provider_key.lower())) return(feature_files) def optional_steps_sleep_input(wildcards): if config["STEP"]["EXCLUDE_SLEEP"]["EXCLUDE"] == True and config["STEP"]["EXCLUDE_SLEEP"]["TYPE"] == "FITBIT_BASED": return "data/raw/{pid}/fitbit_sleep_summary_with_datetime.csv" else: return [] def input_merge_sensor_features_for_individual_participants(wildcards): feature_files = [] for config_key in config.keys(): if config_key.startswith(("PHONE", "FITBIT", "EMPATICA")) and "PROVIDERS" in config[config_key] and isinstance(config[config_key]["PROVIDERS"], dict): for provider_key, provider in config[config_key]["PROVIDERS"].items(): if "COMPUTE" in provider.keys() and provider["COMPUTE"]: feature_files.append("data/processed/features/{pid}/" + config_key.lower() + ".csv") break return feature_files def get_phone_sensor_names(): phone_sensor_names = [] for config_key in config.keys(): if config_key.startswith(("PHONE")) and "PROVIDERS" in config[config_key]: if config_key != "PHONE_DATA_YIELD" and config_key not in phone_sensor_names: phone_sensor_names.append(config_key) return phone_sensor_names from pathlib import Path def get_zip_suffixes(pid): zipfiles = list((Path("data/external/empatica/") / Path(pid)).rglob("*.zip")) suffixes = [] for zipfile in zipfiles: suffixes.append(zipfile.stem) return suffixes def get_all_raw_empatica_sensor_files(wildcards): suffixes = get_zip_suffixes(wildcards.pid) files = ["data/raw/{}/empatica_{}_raw_{}.csv".format(wildcards.pid, wildcards.sensor, suffix) for suffix in suffixes] return(files)