# if you need a new package, you should add it with renv::install(package) so your renv venv is updated library(readr) #' @description #' Gets the sensor data for a specific device id from a database table, file or whatever source you want to query #' #' @param stream_parameters The PHONE_STREAM_PARAMETERS key in config.yaml. If you need specific parameters add them there. #' @param device A device ID string #' @param sensor_container database table or file containing the sensor data for all participants. This is the FITBIT_SENSOR[CONTAINER] key in config.yaml #' @param columns the columns needed from this sensor (we recommend to only return these columns instead of every column in sensor_container) #' @return A dataframe with the sensor data for device pull_data <- function(stream_parameters, device, sensor, sensor_container, columns){ if(!dir.exists(stream_parameters$FOLDER)) stop("[FITBIT_DATA_STREAMS][fitbitparsed_csv][FOLDER] does not exist: ", stream_parameters$FOLDER) data_file <- file.path(stream_parameters$FOLDER, sensor_container) if(!file.exists(data_file)) stop("The data container should be a CSV file but it does not exist: ", data_file) if(!endsWith(data_file, ".csv")) stop("The data container should be a CSV file: ", data_file) # Letting the user know what we are doing message(paste0("Reading this CSV file: ", data_file)) sensor_data <- read_delim_chunked(data_file, escape_backslash = TRUE, delim = ",", escape_double = FALSE, quote = "\"", callback = DataFrameCallback$new(function(x, pos) x[x[[columns$DEVICE_ID]] == device, unlist(columns, use.names = FALSE)] ), progress = T, chunk_size = 50000) if(is.null(sensor_data)) # emtpy file sensor_data <- read.csv(data_file) if(nrow(sensor_data) == 0) warning("The device '", device,"' did not have data in ", sensor_container) return(sensor_data) }