def optional_heatmap_days_by_sensors_input(wildcards): with open("data/external/"+wildcards.pid, encoding="ISO-8859-1") as external_file: external_file_content = external_file.readlines() platforms = external_file_content[1].strip().split(",") if platforms[0] == "multiple" or (len(platforms) > 1 and "android" in platforms and "ios" in platforms): platform = "android" else: platform = platforms[0] input_for_heatmap_days_by_sensors = [] for sensor in config["HEATMAP_DAYS_BY_SENSORS"]["SENSORS"]: if sensor == "activity_recognition" or sensor == "conversation": if sensor.upper() not in config: raise ValueError("Please check SENEORS parameter in HEATMAP_DAYS_BY_SENSORS section of config.yaml") if platform not in ["android", "ios"]: raise ValueError("Platform (line 2) in a participant file should be 'android', 'ios', or 'multiple'. You typed '" + platforms + "'") input_for_heatmap_days_by_sensors.append("data/raw/{pid}/" + config[sensor.upper()]["DB_TABLE"][platform.upper()] + "_with_datetime.csv") else: input_for_heatmap_days_by_sensors.append("data/raw/{pid}/" + sensor + "_with_datetime.csv") return input_for_heatmap_days_by_sensors rule heatmap_features_correlations: input: features = expand("data/processed/{pid}/{sensor}_{day_segment}.csv", pid=config["PIDS"], sensor=config["HEATMAP_FEATURES_CORRELATIONS"]["PHONE_FEATURES"]+config["HEATMAP_FEATURES_CORRELATIONS"]["FITBIT_FEATURES"], day_segment=config["DAY_SEGMENTS"]), phone_valid_sensed_days = expand("data/interim/{pid}/phone_valid_sensed_days_{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins.csv", pid=config["PIDS"]) params: min_rows_ratio = config["HEATMAP_FEATURES_CORRELATIONS"]["MIN_ROWS_RATIO"], corr_threshold = config["HEATMAP_FEATURES_CORRELATIONS"]["CORR_THRESHOLD"], corr_method = config["HEATMAP_FEATURES_CORRELATIONS"]["CORR_METHOD"] output: "reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/heatmap_features_correlations.html" script: "../src/visualization/heatmap_features_correlations.py" rule histogram_valid_sensed_hours: input: phone_valid_sensed_days = expand("data/interim/{pid}/phone_valid_sensed_days_{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins.csv", pid=config["PIDS"]) output: "reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/histogram_valid_sensed_hours.html" script: "../src/visualization/histogram_valid_sensed_hours.py" rule heatmap_days_by_sensors: input: sensors = optional_heatmap_days_by_sensors_input, phone_valid_sensed_days = "data/interim/{pid}/phone_valid_sensed_days_{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins.csv" params: pid = "{pid}", expected_num_of_days = config["HEATMAP_DAYS_BY_SENSORS"]["EXPECTED_NUM_OF_DAYS"] output: "reports/interim/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/{pid}/heatmap_days_by_sensors.html" script: "../src/visualization/heatmap_days_by_sensors.py" rule heatmap_days_by_sensors_all_participants: input: heatmap_rows = expand("reports/interim/{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins/{pid}/heatmap_days_by_sensors.html", pid=config["PIDS"]) output: "reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/heatmap_days_by_sensors_all_participants.html" script: "../src/visualization/heatmap_days_by_sensors_all_participants.Rmd" rule heatmap_sensed_bins: input: sensor = "data/interim/{pid}/phone_sensed_bins.csv", pid_file = "data/external/{pid}" params: pid = "{pid}", bin_size = config["HEATMAP_SENSED_BINS"]["BIN_SIZE"] output: "reports/interim/heatmap_sensed_bins/{pid}/heatmap_sensed_bins.html" script: "../src/visualization/heatmap_sensed_bins.py" rule heatmap_sensed_bins_all_participants: input: heatmap_sensed_bins = expand("reports/interim/heatmap_sensed_bins/{pid}/heatmap_sensed_bins.html", pid=config["PIDS"]) output: "reports/data_exploration/heatmap_sensed_bins_all_participants.html" script: "../src/visualization/heatmap_sensed_bins_all_participants.Rmd" rule overall_compliance_heatmap: input: phone_sensed_bins = expand("data/interim/{pid}/phone_sensed_bins.csv", pid=config["PIDS"]), phone_valid_sensed_days = expand("data/interim/{pid}/phone_valid_sensed_days_{{min_valid_hours_per_day}}hours_{{min_valid_bins_per_hour}}bins.csv", pid=config["PIDS"]), pid_files = expand("data/external/{pid}", pid=config["PIDS"]) params: only_show_valid_days = config["OVERALL_COMPLIANCE_HEATMAP"]["ONLY_SHOW_VALID_DAYS"], local_timezone = config["READABLE_DATETIME"]["FIXED_TIMEZONE"], expected_num_of_days = config["OVERALL_COMPLIANCE_HEATMAP"]["EXPECTED_NUM_OF_DAYS"], bin_size = config["OVERALL_COMPLIANCE_HEATMAP"]["BIN_SIZE"], min_bins_per_hour = "{min_valid_bins_per_hour}" output: "reports/data_exploration/{min_valid_hours_per_day}hours_{min_valid_bins_per_hour}bins/overall_compliance_heatmap.html" script: "../src/visualization/overall_compliance_heatmap.py" # rule heatmap_rows: # input: # sensor = "data/raw/{pid}/{sensor}_with_datetime.csv", # pid_file = "data/external/{pid}" # params: # table = "{sensor}", # pid = "{pid}", # bin_size = config["PHONE_VALID_SENSED_BINS"]["BIN_SIZE"] # output: # "reports/figures/{pid}/{sensor}_heatmap_rows.html" # script: # "../src/visualization/heatmap_rows.py" # rule battery_consumption_rates_barchart: # input: # sensor = "data/processed/{pid}/battery_daily.csv", # pid_file = "data/external/{pid}" # params: # pid = "{pid}" # output: # "reports/figures/{pid}/battery_consumption_rates_barchart.html" # script: # "../src/visualization/battery_consumption_rates_barchart.py" # rule compliance_report: # input: # sensor_heatmaps = expand("reports/figures/{{pid}}/{sensor}_heatmap_rows.html", sensor=PHONE_SENSORS), # compliance_heatmap = rules.compliance_heatmap.output # output: # "reports/compliance/{pid}/compliance_report.html", # script: # "../src/visualization/compliance_report.Rmd"