services:
- mysql
- docker
sudo: required
language: python
jobs:
  include:
  - stage: Tests
    name: Python 3.7 on Xenial Linux
    os: linux
    language: python
    python: 3.7
    before_install:
    - /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install.sh)"
    - export PATH=/home/linuxbrew/.linuxbrew/bin:$PATH
    - source ~/.bashrc
    - sudo apt-get install linuxbrew-wrapper
    - brew tap --shallow linuxbrew/xorg
    - brew install r
    - R --version
    - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O
      miniconda.sh;
    - bash miniconda.sh -b -p $HOME/miniconda
    - source "$HOME/miniconda/etc/profile.d/conda.sh"
    - hash -r
    - conda config --set always_yes yes --set changeps1 no
    install:
    - conda init bash
    - conda update -q --all --yes conda
    - conda env create -q -n test-environment python=$TRAVIS_PYTHON_VERSION --file
      environment.yml
    - conda activate test-environment
    - snakemake -j1 renv_install
    - R -e 'renv::settings$use.cache(FALSE)'
    - snakemake -j1 renv_restore
    cache:
      directories:
      - "/home/travis/.linuxbrew"
      - "$HOME/.local/share/renv"
      - "$TRAVIS_BUILD_DIR/renv/library"
    script:
    - bash tests/scripts/run_tests.sh
  - name: Python 3.7 on macOS
    os: osx
    osx_image: xcode11.3
    language: generic
    before_install:
    - HOMEBREW_NO_AUTO_UPDATE=1 brew install gcc@9
    - HOMEBREW_NO_AUTO_UPDATE=1 brew install https://github.com/Homebrew/homebrew-core/raw/218998d/Formula/r.rb
    - R --version
    - HOMEBREW_NO_AUTO_UPDATE=1 brew install mysql
    - HOMEBREW_NO_AUTO_UPDATE=1 brew services start mysql
    - HOMEBREW_NO_AUTO_UPDATE=1 brew cask install miniconda
    - eval "$(/opt/miniconda3/condabin/conda shell.bash hook)"
    - eval "$(conda shell.bash hook)"
    install:
    - conda init bash
    - conda update -q --all --yes conda
    - conda env create -q -n test-environment python=$TRAVIS_PYTHON_VERSION --file
      environment.yml
    - conda activate test-environment
    - snakemake -j1 renv_install
    - R -e 'renv::settings$use.cache(FALSE)'
    - snakemake -j1 renv_restore
    env:
    - RENV_PATHS_ROOT="$HOME/renv/cache"
    cache:
      directories:
      - "/usr/local/lib/R"
      - "$RENV_PATHS_ROOT"
      - "$TRAVIS_BUILD_DIR/renv/library"
    script:
    - bash tests/scripts/run_tests.sh
  - stage: deploy
    name: Python 3.7 on Xenial Linux Docker
    os: linux
    language: python
    script:
    - docker build -t rapids .
    - docker login -u "agamk" -p $DOCKERPWD
    - docker tag rapids agamk/rapids:travislatest
    - docker push agamk/rapids:travislatest
branches:
  only:
  - master
notifications:
  email: false
  slack:
    secure: cJIpmIjb3zA5AMDBo9axF1v6fYNIgMm6s6UdMNOlHiT511xHGsaLUFej3lACwQLig4Gr94ySI61YdrP+RX1lFcYxusH+kUU/c8LX0PmSKNeKnycM3w/pCM+yTp/6oQG6ZrJD7pNm6zhB0xPL61uSmYhcr+JJ1sh4iLiON+J8/C+IfnAHm1ORkxJ0IxASkiP/LvaiAQDw8lNyYIZNWjSDNZbx68o1VNakyk6Vik3x8omiE3w33rzI2/JAx//QTxOq2J0dtV1AqYYSOWS4iXblV09NLBqgGrhAhrQ6+TbPHSPIyL/4EdhvS+YXO+SBWS7ODD7j/MuL6XiA4SujW72od2rgXNmOjFnlQvIrULO5bzv39BKKDkldvz9+XCyXLcjoLIwA/rmUnwMndNoC7NoD/CkQEevUxswXXB9811BmIFx/7GOHouVxwB2gaMAzkCroZJVwgbrc6ESSOVE5SMcb3wPMbpd8cXOgVZXJcmk5wK206zxXPigCvFfknqOnwDqRgyIWSFoTd/2wHppA7ND3R5U42nQTbEQ7MiONsOo61GlJTTxJELz32sLKl388AuAgOY7+0sqPibxMaHJkF1V4nYVTH0/H5bO/edK4VHMloJ6s0kuyko7LT5EMQf3pBJij5TnYmD2E60t+bSBAxHuH7WA5dvL+igjGEwROnxDc9pc=
    on_success: always
    template:
    - Repo `%{repository_slug}` *%{result}* build (<%{build_url}|#%{build_number}>)
      for commit (<%{compare_url}|%{commit}>) on branch `%{branch}`.
    - 'Execution time: *%{duration}*'
    - 'Message: %{message}'
env:
  global:
    secure: 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