services: 
  - mysql

language: python
python:
  - "3.7"

before_install:
  - sudo add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu xenial-cran40/'
  - sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
  # - sudo apt-get update
  - sudo apt-get install -y r-base r-base-dev
  - sudo chmod ugo+rw /usr/local/lib/R/site-library 
  - R -e 'install.packages(c( "rmarkdown"), repos = "http://cran.us.r-project.org")'  

install:
  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
  - bash miniconda.sh -b -p $HOME/miniconda
  - source "$HOME/miniconda/etc/profile.d/conda.sh"
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda update -q conda
  # Useful for debugging any issues with conda
  - conda info -a

  - conda env create -q -n test-environment python=$TRAVIS_PYTHON_VERSION --file environment.yml
  - conda activate test-environment

before_script:
  # Install Packrat 
  - snakemake packrat_install
  - snakemake packrat_init
  - snakemake packrat_restore

script:
  - cp -r tests/data/raw/* data/raw
  - snakemake --profile tests/settings -R sms_features
  - python -m unittest discover tests/scripts/ -v