import pandas as pd import itertools def dailyFeaturesFromSummaryData(sleep_summary_data, sleep_type): if sleep_type == "main": sleep_summary_data = sleep_summary_data[sleep_summary_data["is_main_sleep"] == 1] elif sleep_type == "nap": sleep_summary_data = sleep_summary_data[sleep_summary_data["is_main_sleep"] == 0] elif sleep_type == "all": pass else: raise ValueError("sleep_type can only be one of ['main', 'nap', 'all'].") features_sum = sleep_summary_data[["minutes_after_wakeup", "minutes_asleep", "minutes_awake", "minutes_to_fall_asleep", "minutes_in_bed", "local_end_date"]].groupby(["local_end_date"]).sum() features_sum.index.rename("local_date", inplace=True) if "sumdurationafterwakeup" in daily_features_from_summary_data: sleep_daily_features["sleep_daily_sumdurationafterwakeup" + sleep_type] = features_sum["minutes_after_wakeup"] if "sumdurationasleep" in daily_features_from_summary_data: sleep_daily_features["sleep_daily_sumdurationasleep" + sleep_type] = features_sum["minutes_asleep"] if "sumdurationawake" in daily_features_from_summary_data: sleep_daily_features["sleep_daily_sumdurationawake" + sleep_type] = features_sum["minutes_awake"] if "sumdurationtofallasleep" in daily_features_from_summary_data: sleep_daily_features["sleep_daily_sumdurationtofallasleep" + sleep_type] = features_sum["minutes_to_fall_asleep"] if "sumdurationinbed" in daily_features_from_summary_data: sleep_daily_features["sleep_daily_sumdurationinbed" + sleep_type] = features_sum["minutes_in_bed"] features_avg = sleep_summary_data[["efficiency", "local_end_date"]].groupby(["local_end_date"]).mean() features_avg.index.rename("local_date", inplace=True) if "avgefficiency" in daily_features_from_summary_data: sleep_daily_features["sleep_daily_avgefficiency" + sleep_type] = features_avg["efficiency"] features_count = sleep_summary_data[["local_start_date_time", "local_end_date"]].groupby(["local_end_date"]).count() features_count.index.rename("local_date", inplace=True) if "countepisode" in daily_features_from_summary_data: sleep_daily_features["sleep_daily_count" + sleep_type] = features_count["local_start_date_time"] return sleep_daily_features sleep_summary_data = pd.read_csv(snakemake.input["sleep_summary_data"]) sleep_types = snakemake.params["sleep_types"] daily_features_from_summary_data = snakemake.params["daily_features_from_summary_data"] day_segment = snakemake.params["day_segment"] daily_features_can_be_zero = list(set(daily_features_from_summary_data) - set(["avgefficiency"])) colnames_can_be_zero = ["sleep_daily_" + x for x in ["".join(feature) for feature in itertools.product(daily_features_can_be_zero, sleep_types)]] colnames = ["sleep_daily_" + x for x in ["".join(feature) for feature in itertools.product(daily_features_from_summary_data, sleep_types)]] if sleep_summary_data.empty: sleep_daily_features = pd.DataFrame(columns=["local_date"] + colnames) else: sleep_daily_features = pd.DataFrame(columns=colnames) for sleep_type in sleep_types: sleep_daily_features = dailyFeaturesFromSummaryData(sleep_summary_data, sleep_type) sleep_daily_features[colnames_can_be_zero] = sleep_daily_features[colnames_can_be_zero].fillna(0) if day_segment == "daily": sleep_daily_features.to_csv(snakemake.output[0]) else: ValueError("Sleep summary features are only implemented for daily day segments")