def input_merge_metrics_of_single_participant(wildcards): if wildcards.source == "phone_fitbit_metrics": return expand("data/processed/{pid}/{metrics}_{day_segment}.csv", pid=wildcards.pid, metrics=config["METRICS_FOR_ANALYSIS"]["PHONE_METRICS"] + config["METRICS_FOR_ANALYSIS"]["FITBIT_METRICS"], day_segment=wildcards.day_segment) else: return expand("data/processed/{pid}/{metrics}_{day_segment}.csv", pid=wildcards.pid, metrics=config["METRICS_FOR_ANALYSIS"][wildcards.source.upper()], day_segment=wildcards.day_segment) rule merge_metrics_for_individual_model: input: metric_files = input_merge_metrics_of_single_participant, phone_valid_sensed_days = "data/interim/{pid}/phone_valid_sensed_days.csv" params: drop_valid_sensed_days = config["METRICS_FOR_ANALYSIS"]["DROP_VALID_SENSED_DAYS"], source = "{source}" output: "data/processed/{pid}/metrics_for_individual_model/{source}_{day_segment}.csv" script: "../src/models/merge_metrics_for_individual_model.R" rule merge_metrics_for_population_model: input: metric_files = expand("data/processed/{pid}/metrics_for_individual_model/{{source}}_{{day_segment}}.csv", pid=config["PIDS"]) output: "data/processed/metrics_for_population_model/{source}_{day_segment}.csv" script: "../src/models/merge_metrics_for_population_model.R"