import pandas as pd from sklearn.preprocessing import StandardScaler import numpy as np from cr_features.helper_functions import convert_ibi_to2d_time, hrv_features from cr_features.hrv import extract_hrv_features_2d_wrapper, get_HRV_features from cr_features_helper_methods import extract_second_order_features import math import sys # pd.set_option('display.max_rows', 1000) pd.set_option('display.max_columns', None) def extract_ibi_features_from_intraday_data(ibi_intraday_data, features, window_length, time_segment, filter_data_by_segment): ibi_intraday_features = pd.DataFrame(columns=["local_segment"] + features) if not ibi_intraday_data.empty: ibi_intraday_data = filter_data_by_segment(ibi_intraday_data, time_segment) if not ibi_intraday_data.empty: ibi_intraday_features = pd.DataFrame() # apply methods from calculate features module if window_length is None: ibi_intraday_features = \ ibi_intraday_data.groupby('local_segment').apply(\ lambda x: extract_hrv_features_2d_wrapper( signal_2D = \ convert_ibi_to2d_time(x[['timings', 'inter_beat_interval']], math.ceil(x['timings'].iloc[-1]))[0], ibi_timings = \ convert_ibi_to2d_time(x[['timings', 'inter_beat_interval']], math.ceil(x['timings'].iloc[-1]))[1], sampling=None, hampel_fiter=False, median_filter=False, mod_z_score_filter=True, feature_names=features)) else: ibi_intraday_features = \ ibi_intraday_data.groupby('local_segment').apply(\ lambda x: extract_hrv_features_2d_wrapper( signal_2D = convert_ibi_to2d_time(x[['timings', 'inter_beat_interval']], window_length)[0], ibi_timings = convert_ibi_to2d_time(x[['timings', 'inter_beat_interval']], window_length)[1], sampling=None, hampel_fiter=False, median_filter=False, mod_z_score_filter=True, feature_names=features)) ibi_intraday_features.reset_index(inplace=True) return ibi_intraday_features def cr_features(sensor_data_files, time_segment, provider, filter_data_by_segment, *args, **kwargs): data_types = {'local_timezone': 'str', 'device_id': 'str', 'timestamp': 'int64', 'inter_beat_interval': 'float64', 'timings': 'float64', 'local_date_time': 'str', 'local_date': "str", 'local_time': "str", 'local_hour': "str", 'local_minute': "str", 'assigned_segments': "str"} temperature_intraday_data = pd.read_csv(sensor_data_files["sensor_data"], dtype=data_types) ibi_intraday_data = pd.read_csv(sensor_data_files["sensor_data"]) requested_intraday_features = provider["FEATURES"] calc_windows = kwargs.get('calc_windows', False) if provider["WINDOWS"]["COMPUTE"] and calc_windows: requested_window_length = provider["WINDOWS"]["WINDOW_LENGTH"] else: requested_window_length = None # name of the features this function can compute base_intraday_features_names = hrv_features # the subset of requested features this function can compute intraday_features_to_compute = list(set(requested_intraday_features) & set(base_intraday_features_names)) # extract features from intraday data ibi_intraday_features = extract_ibi_features_from_intraday_data(ibi_intraday_data, intraday_features_to_compute, requested_window_length, time_segment, filter_data_by_segment) if calc_windows: so_features_names = provider["WINDOWS"]["SECOND_ORDER_FEATURES"] ibi_second_order_features = extract_second_order_features(ibi_intraday_features, so_features_names) return ibi_intraday_features, ibi_second_order_features return ibi_intraday_features