source("renv/activate.R") library(tidyr) library(purrr) library("dplyr", warn.conflicts = F) library(stringr) feature_files <- snakemake@input[["feature_files"]] features_of_all_participants <- tibble(filename = feature_files) %>% # create a data frame mutate(file_contents = map(filename, ~ read.csv(., stringsAsFactors = F, colClasses = c(local_date = "character"))), pid = str_match(filename, ".*/([a-zA-Z]+?[0-9]+?)/.*")[,2]) %>% unnest(cols = c(file_contents)) %>% select(-filename) write.csv(features_of_all_participants, snakemake@output[[1]], row.names = FALSE)