import pandas as pd import numpy as np from scipy.stats import entropy import json heartrate_data = pd.read_csv(snakemake.input[0], parse_dates=["local_date_time", "local_date"]) day_segment = snakemake.params["day_segment"] metrics = snakemake.params["metrics"] heartrate_features = pd.DataFrame(columns=["local_date"] + ["heartrate_" + day_segment + "_" + x for x in metrics]) if not heartrate_data.empty: device_id = heartrate_data["device_id"][0] num_rows_per_minute = heartrate_data.groupby(["local_date", "local_hour", "local_minute"]).count().mean()["device_id"] if day_segment != "daily": heartrate_data =heartrate_data[heartrate_data["local_day_segment"] == day_segment] if not heartrate_data.empty: heartrate_features = pd.DataFrame() # get stats of heartrate if "maxhr" in metrics: heartrate_features["heartrate_" + day_segment + "_maxhr"] = heartrate_data.groupby(["local_date"])["heartrate"].max() if "minhr" in metrics: heartrate_features["heartrate_" + day_segment + "_minhr"] = heartrate_data.groupby(["local_date"])["heartrate"].min() if "avghr" in metrics: heartrate_features["heartrate_" + day_segment + "_avghr"] = heartrate_data.groupby(["local_date"])["heartrate"].mean() if "medianhr" in metrics: heartrate_features["heartrate_" + day_segment + "_medianhr"] = heartrate_data.groupby(["local_date"])["heartrate"].median() if "modehr" in metrics: heartrate_features["heartrate_" + day_segment + "_modehr"] = heartrate_data.groupby(["local_date"])["heartrate"].agg(pd.Series.mode) if "stdhr" in metrics: heartrate_features["heartrate_" + day_segment + "_stdhr"] = heartrate_data.groupby(["local_date"])["heartrate"].std() if "diffmaxmodehr" in metrics: heartrate_features["heartrate_" + day_segment + "_diffmaxmodehr"] = heartrate_data.groupby(["local_date"])["heartrate"].max() - heartrate_data.groupby(["local_date"])["heartrate"].agg(pd.Series.mode) if "diffminmodehr" in metrics: heartrate_features["heartrate_" + day_segment + "_diffminmodehr"] = heartrate_data.groupby(["local_date"])["heartrate"].agg(pd.Series.mode) - heartrate_data.groupby(["local_date"])["heartrate"].min() if "entropyhr" in metrics: heartrate_features["heartrate_" + day_segment + "_entropyhr"] = heartrate_data.groupby(["local_date"])["heartrate"].agg(entropy) # get number of minutes in each heart rate zone for feature_name in list(set(["lengthoutofrange", "lengthfatburn", "lengthcardio", "lengthpeak"]) & set(metrics)): heartrate_zone = heartrate_data[heartrate_data["heartrate_zone"] == feature_name[6:]] heartrate_features["heartrate_" + day_segment + "_" + feature_name] = heartrate_zone.groupby(["local_date"])["device_id"].count() / num_rows_per_minute heartrate_features = heartrate_features.reset_index() heartrate_features.to_csv(snakemake.output[0], index=False)