import pandas as pd from scipy.stats import entropy from CalculatingFeatures.helper_functions import convertInputInto2d, hrvFeatureNames, frequencyFeatureNames from CalculatingFeatures.calculate_features import calculateFeatures import sys def getSampleRate(data): try: timestamps_diff = data['timestamp'].diff().dropna().mean() except: raise Exception("Error occured while trying to get the mean sample rate from the data.") return 1000/timestamps_diff def extractBVPFeaturesFromIntradayData(bvp_intraday_data, features, window_length, time_segment, filter_data_by_segment): bvp_intraday_features = pd.DataFrame(columns=["local_segment"] + features) if not bvp_intraday_data.empty: sample_rate = getSampleRate(bvp_intraday_data) bvp_intraday_data = filter_data_by_segment(bvp_intraday_data, time_segment) if not bvp_intraday_data.empty: bvp_intraday_features = pd.DataFrame() # apply methods from calculate features module if window_length is None: bvp_intraday_features = \ bvp_intraday_data.groupby('local_segment').apply(\ lambda x: calculateFeatures(convertInputInto2d(x['blood_volume_pulse'], x.shape[0]), fs=int(sample_rate), featureNames=features)) else: bvp_intraday_features = \ bvp_intraday_data.groupby('local_segment').apply(\ lambda x: calculateFeatures(convertInputInto2d(x['blood_volume_pulse'], window_length*int(sample_rate)), fs=int(sample_rate), featureNames=features)) bvp_intraday_features.reset_index(inplace=True) return bvp_intraday_features def cr_features(sensor_data_files, time_segment, provider, filter_data_by_segment, *args, **kwargs): bvp_intraday_data = pd.read_csv(sensor_data_files["sensor_data"]) requested_intraday_features = provider["FEATURES"] if provider["WINDOWS"]["COMPUTE"]: requested_window_length = provider["WINDOWS"]["WINDOW_LENGTH"] else: requested_window_length = None # name of the features this function can compute base_intraday_features_names = hrvFeatureNames + frequencyFeatureNames # the subset of requested features this function can compute intraday_features_to_compute = list(set(requested_intraday_features) & set(base_intraday_features_names)) # extract features from intraday data bvp_intraday_features = extractBVPFeaturesFromIntradayData(bvp_intraday_data, intraday_features_to_compute, requested_window_length, time_segment, filter_data_by_segment) return bvp_intraday_features